Table 1 Box C/D snoRNA genes in E. histolytica
From: Computational prediction and validation of C/D, H/ACA and Eh_U3 snoRNAs of Entamoeba histolytica
snoRNA genes | Len. | Seq. | Modification | Antisense element | Scaffold | Start | End | Location |
|---|---|---|---|---|---|---|---|---|
(nt) | (%) | |||||||
**Me-Eh-SSU-G1296 | 78 | 92% | SSU-G1296 | 12nt(5') 100% | DS571223 | 24176 | 24254 | IR |
SSU-G1298 | 10nt(5’) 100% | |||||||
SSU-G1195 | 10nt(5’) 100% | |||||||
Me-Eh-SSU-U1024 | 80 | 96% | SSU-U1024 | 14nt(5') 95% | DS571261 | 44605 | 44684 | IR ● |
SSU-U1822 | 11nt(5’) 98% | |||||||
**Me-Eh-SSU-A83 | 78 | 100% | SSU-A83 | 16nt(5') 100% | DS571196 | 58225 | 58327 | IR |
SSU-U87 | 12nt(5’) 100% | |||||||
Me-Eh-SSU-G41 | 68 | 93% | SSU-G41 | 11nt(5’) 100% | DS571147 | 177417 | 177350 | IR |
Me-Eh-SSU-A431 | 68 | 94% | SSU-A431 | 13nt(5') 100% | DS571331 | 10236 | 10303 | IR |
Me-Eh-SSU-U871 | 80 | 96% | SSU-U871 | 20nt(5’) 95% | DS571673 | 2402 | 2481 | NA |
*Me-Eh-SSU-G1535 | 82 | 93% | SSU-G1535 | 12nt(5') 100% | DS571215 | 31121 | 31040 | IR |
LSU-G2053 | 9nt(5') 100% | |||||||
Me-Eh-SSU-A27 | 66 | 100% | SSU-A27 | 11nt(5') 100% | DS571226 | 26372 | 26307 | IR |
Me-Eh-SSU-A1830 | 83 | 88% | SSU-A1830 | 11nt(5') 100% | DS571152 | 29351 | 29433 | EHI_049420 (+) |
Me-Eh-SSU-A836 | 103 | -- | SSU-A836 | 13nt(5’) | DS571152 | 99242 | 99140 | IR |
Me-Eh-SSU-G1152 | 60 | 91% | SSU-G1152 | 12nt(3') 100% | DS571335 | 19522 | 19581 | IR |
Me-Eh-SSU-G628 | 97 | -- | SSU-G628 | 10nt(5’) | DS571451 | 15436 | 15532 | IR |
DS571177 | 52928 | 52831 | ||||||
Me-Eh-SSU-A1183 | 82 | -- | SSU-A1183 | 10nt(5’) | DS571164 | 22795 | 22876 | IR |
SSU-G1836 | 13nt(5’) | |||||||
SSU-A1485 | 9nt(5’) | |||||||
LSU-A520 | 12nt(3’) | |||||||
LSU-U1210 | 12nt(5’) | |||||||
LSU-A145 | 10nt(3’) | |||||||
Me-Eh-SSU-A790 | 68 | 94% | SSU-A790 | 10nt(5’) 100% | DS571171 | 51701 | 51634 | IR |
SSU-A1496 | 11nt(5’) 100% | |||||||
LSU-A801 | 11nt(5’) 100% | |||||||
LSU-A1834 | 10nt(5’) 100% | |||||||
LSU-A2555 | 11nt(5’) 100% | |||||||
Me-Eh-SSU-C1805 | 63 | 96% | SSU-C1805 | 10nt(5') 100% | DS571145 | 496851 | 496789 | IR |
Me-Eh-LSU-A928a | 69 | 97% | LSU-A928 | 11nt(5') 100% | DS571323 | 13072 | 13140 | IR |
Me-Eh-LSU-A928b | 66 | 98% | LSU-A782 | 11nt(5') 100% | DS571163 | 50734 | 50669 | IR |
LSU-A928 | 9nt(5’) 100% | |||||||
LSU-A1034 | 9nt(5’) 100% | |||||||
Me-Eh-LSU-U1868 | 101 | 92% | LSU-U1868 | 13nt(5’) 92.3% | DS571175 | 28933 | 28833 | IR |
Me-Eh-LSU-U3580a | 103 | -- | LSU-U3580 | 19nt(5’) | DS571304 | 677 | 575 | IR |
Me-Eh-LSU-U3580b | 105 | -- | LSU-U3580 | 19nt(5’) | DS571305 | 36390 | 36494 | IR |
Me-Eh-LSU-A785 | 62 | 96% | LSU-A785 | 13nt(5') 100% | DS571416 | 15678 | 15739 | IR |
Me-Eh-LSU-G2958 | 70 | 97% | LSU-G2958 | 13nt(5') 100% | DS571205 | 22350 | 22419 | IR |
*Me-Eh-LSU-A3089 | 71 | 92% | LSU-A3089 | 11nt(5’) 100% | DS571180 | 41005 | 40935 | IR |
*Me-Eh-LSU-C2414 | 69 | 97% | LSU-C2414 | 11nt(5') 100% | DS571473 | 957 | 1025 | IR ● |
Me-Eh-LSU-G926 | 59 | 98% | LSU-G926 | 13nt(3') 100% | DS571150 | 13447 | 13389 | IR |
Me-Eh-LSU-U1018 | 69 | -- | LSU-U1018 | 11nt(5’) | DS571215 | 62034 | 62102 | IR |
LSU-U2783 | 14nt(5’) | DS571316 | 3067 | 2999 | ||||
Me-Eh-LSU-G1028 | 61 | 87% | LSU-G1028 | 14nt(3’) 100% | DS571174 | 92482 | 92422 | IR |
Me-Eh-LSU-U1176a | 109 | 94% | LSU-U1176 | 14nt(5') 100% | DS571307 | 17712 | 17820 | IR ▲ |
Me-Eh-LSU-U1176b | 109 | 94% | LSU-U1176 | 14nt(5') 100% | DS571419 | 10643 | 10535 | IR |
Me-Eh-LSU-U1176c | 109 | 93% | LSU-U1176 | 14nt(5') 100% | DS571792 | 3710 | 3820 | IR |
Me-Eh-LSU-A2333 | 128 | 93% | LSU-A2333 | 12nt(3') 100% | DS571208 | 15564 | 15691 | IR ● |
**Me-Eh-LSU-A228 | 72 | 97% | LSU-A228 | 13nt(5') 100% | DS571397 | 17920 | 17991 | EHI_003940 |
Intron of gene | ||||||||
40 S ribosomal protein S4, putative | ||||||||
**Me-Eh-5.8 S-U84 | 62 | 86% | 5.8 S-U84 | 18nt(3’) 91% | DS571194 | 27534 | 27595 | 3’UTR |
*Me-Eh-5.8 S-A92 | 115 | 85% | 5.8 S-A92 | 11nt(5’) 94% | DS571180 | 76405 | 76291 | EHI_118830 (−) ■ |