Table 2 Box H/ACA snoRNA genes in E. histolytica
From: Computational prediction and validation of C/D, H/ACA and Eh_U3 snoRNAs of Entamoeba histolytica
snoRNA genes | Len | Seq | Modification | Antisense element | Scaffold | Start | End | Location |
|---|---|---|---|---|---|---|---|---|
(nt) | (%) | |||||||
**ACA-Eh-SSU1315 | 121 | 96% | SSU1315 | 6 + 7nt (5’) 100% | DS571149 | 98793 | 98673 | IR |
ACA-Eh-SSU631 | 137 | - | SSU631 | 6 + 5nt (3’) | DS572405 | 485 | 349 | NA |
- | SSU1114 | 8 + 9nt (5’) | DS572405 | 485 | 349 | |||
ACA-Eh-SSU1727 | 135 | 87% | SSU1727 | 9 + 5nt (5’) 93% | DS571346 | 12499 | 12633 | IR/5'UTR |
**ACA-Eh-SSU626 | 127 | 94% | SSU626 | 6 + 6nt(3') 100% | DS571463 | 13091 | 12965 | IR |
ACA-Eh-SSU461 | 142 | - | SSU461 | 7 + 5nt (3’) | DS571171 | 90117 | 90258 | IR |
ACA-Eh-SSU1675 | 127 | 92% | SSU1675 | 5 + 9nt (3') 93% | DS571182 | 71521 | 71647 | IR |
*ACA-Eh-SSU526 | 126 | 94% | SSU526 | 7 + 5nt (5') 100% | DS571463 | 12972 | 13097 | IR |
*ACA-Eh-LSU3008 | 129 | 92% | LSU3008 | 7 + 5nt (5') 100% | DS571272 | 39423 | 39295 | IR |
ACA-Eh-LSU1172a | 142 | - | LSU1172 | 5 + 4nt (5’) | DS571149 | 73439 | 73580 | IR |
ACA-Eh-LSU1172b | 141 | - | LSU1172 | 5 + 4nt (3’) | DS571307 | 22719 | 22859 | IR |
ACA-Eh-LSU1107b | 155 | - | LSU1107 | 11 + 3nt (5’) | DS571159 | 2240 | 2086 | IR |
- | LSU1172 | 6 + 8nt (3’) | DS571159 | 2240 | 2086 | |||
- | 5.8 S52 | 8 + 3nt (3’) | DS571159 | 2240 | 2086 | |||
ACA-Eh-LSU1650 | 118 | 89% | LSU1650 | 8 + 5nt (5’) 100% | DS571267 | 21025 | 21142 | IR |
ACA-Eh-LSU3087 | 129 | 92% | LSU3087 | 6 + 4nt (5') 100% | DS571178 | 75373 | 75501 | IR |
ACA-EH-LSU2791 | 161 | LSU2791 | 6 + 7nt (5’) | DS571159 | 59530 | 59690 | IR | |
ACA-Eh-LSU3155 | 151 | 88% | LSU3155 | 5 + 6nt (3') 91% | DS571255 | 1114 | 963 | IR |
ACA-Eh-LSU3221 | 152 | 79% | LSU3221 | 9 + 4nt (5’) 91.6 | DS571339 | 14712 | 14561 | IR |
ACA-Eh-LSU1159a | 154 | - | LSU1159 | 4 + 5nt (5’) | DS571589 | 7973 | 8126 | IR |
DS571660 | 2209 | 2056 | ||||||
ACA-Eh-LSU2700 | 144 | 86% | LSU2700 | 8 + 3nt (3') 100% | DS571160 | 113417 | 113560 | IR |
144 | LSU1159 | 6 + 4nt (3') 100% | DS571160 | 113417 | 113560 | |||
ACA-Eh-LSU1080 | 123 | - | LSU1080 | 3 + 7nt (5’) | DS571228 | 4519 | 4641 | IR |
**ACA-Eh-LSU1343 | 137 | - | LSU1343 | 5 + 5nt (5’) | DS571219 | 12011 | 11875 | IR |
ACA-Eh-LSU2997b | 129 | 96% | LSU2997 | 5 + 4nt (5') 100% | DS571145 | 384477 | 384605 | IR |
ACA-Eh-LSU339 | 148 | - | LSU339 | 5 + 4nt (5’) | DS571174 | 50939 | 50792 | IR |
ACA-Eh-LSU1123 | 148 | - | LSU1123 | 4 + 7nt (5’) | DS571225 | 51991 | 52138 | IR |
ACA-Eh-LSU1005 | 148 | - | LSU1005 | 4 + 5nt (3’) | DS571402 | 1263 | 1116 | IR |
ACA-Eh-LSU1236a | 141 | - | LSU1236 | 3 + 6nt (3’) | DS571481 | 789 | 649 | IR |
ACA-Eh-LSU1236b | 141 | - | LSU1236 | 3 + 6nt (3’) | DS571159 | 21643 | 21503 | IR |
ACA-Eh-LSU1107a | 154 | - | LSU1107 | 11 + 4nt (3’) | DS571208 | 46788 | 46941 | IR/ 5'UTR |
- | SSU1114 | 8 + 9nt (5’) | DS571208 | 46788 | 46941 | |||
**ACA-Eh-LSU2288 | 126 | 92% | LSU2288 | 4 + 9nt(5') 100% | DS571148 | 172182 | 172057 | IR |
SSU1431 | 6 + 4nt (3') 90.0% | DS571148 | 172182 | 172057 | ||||
ACA-Eh-LSU1159b | 153 | - | LSU1159 | 5 + 5nt (5’) | DS572251 | 153 | 1 | NA |
- | LSU3221 | 4 + 6nt (3’) | DS572251 | 153 | 1 | |||
- | SSU826 | 4 + 6nt (5’) | DS572251 | 153 | 1 | |||
ACA-Eh-LSU2997a | 122 | - | LSU2997 | 5 + 6nt (5’) | DS572347 | 1128 | 1007 | NA |
DS572347 | 800 | 679 | ||||||
DS572347 | 464 | 343 | ||||||
DS572347 | 132 | 11 | ||||||
ACA-Eh-5.8 S80a | 140 | - | 5.8 S80 | 5 + 9nt (5’) | DS571346 | 5092 | 4953 | IR |
ACA-Eh-5.8 S80b | 132 | - | 5.8S80 | 5 + 6nt (5’) | DS571206 | 1568 | 1437 | IR |
- | LSU3221 | 5 + 5nt (5’) | DS571206 | 1568 | 1437 | |||
ACA-Eh-SSU740 | 141 | 92% | SSU740 | 4 + 7nt (3') 91% | DS571156 | 54460 | 54320 | EHI_182810 (+) |
*ACA-Eh-SSU188 | 135 | 93% | SSU188 | 6 + 3nt (5’) 89% | DS571501 | 5129 | 5263 | EHI_172000 (+) |
*ACA-Eh-SSU1216 | 142 | 77% | SSU1216 | 5 + 4nt (3’) 89% | DS571247 | 8141 | 8000 | EHI_016340 (−) |
ACA-Eh-SSU299 | 169 | 94% | SSU299 | 4 + 6nt (3') 100% | DS571161 | 119527 | 119695 | EHI_142230 (+) |
ACA-Eh-SSU1212 | 129 | 93% | SSU1212 | 9 + 7nt (3') 100% | DS571169 | 105772 | 105900 | EHI_098580 (−) |
**ACA-Eh-LSU2809 | 156 | 82% | LSU2809 | 12 + 3nt(3') 86.7% | DS571148 | 116513 | 116668 | EHI_012330 (−) |
ACA-Eh-LSU2335 | 131 | 93% | LSU2335 | 3 + 6nt (5’) 100% | DS571304 | 17766 | 17896 | EHI_161910 (−) |
ACA-Eh-LSU2493 | 135 | 87% | LSU2493 | 8 + 3nt (5’) 82% | DS571228 | 40854 | 40720 | EHI_161000 (−) ● |
ACA-Eh-LSU1176 | 157 | 97% | LSU1176 | 5 + 4nt (5') 100% | DS571185 | 32437 | 32593 | EHI_104450 (+) |
ACA-Eh-LSU2268 | 135 | 97% | LSU2268 | 7 + 3nt (3') 90% | DS571154 | 24191 | 24057 | EHI_178500 (−) |
*ACA-Eh-5.8 S84 | 152 | 82% | 5.8 S84 | 7 + 5nt (5’) 92% | DS571169 | 105495 | 105646 | EHI_098580 (−) |