From: Computational prediction and validation of C/D, H/ACA and Eh_U3 snoRNAs of Entamoeba histolytica
snoRNA genes | Len | Seq | Modification | Antisense element | Scaffold | Start | End | Homology Yeast Human | Location |
---|---|---|---|---|---|---|---|---|---|
(nt) | (%) | ||||||||
EhCDOrph1 | 95 | 95% | unknown | unknown | DS571162 | 42554 | 42648 | unknown | EHI_155390 (+) |
EhCDOrph2 | 87 | 94% | unknown | unknown | DS571301 | 21222 | 21308 | unknown | IR |
EhCDOrph3 | 107 | 94% | unknown | unknown | DS571358 | 4592 | 4698 | unknown | IR |
EhCDOrph4 | 91 | 96% | unknown | unknown | DS571422 | 5594 | 5684 | unknown | IR |
EhCDOrph5 | 84 | 94% | unknown | unknown | DS571468 | 9619 | 9702 | unknown | IR |
EhCDOrph6 | 94 | -- | unknown | unknown | DS571178 | 12358 | 12451 | unknown | 3'UTR/IR |
EhCDOrph7 | 94 | -- | unknown | unknown | DS571178 | 13726 | 13819 | unknown | 3'UTR/IR |
EhACAOrph1 | 115 | 91% | unknown | unknown | DS571172 | 5407 | 5293 | unknown | IR |
EhACAOrph2 | 135 | 93% | unknown | unknown | DS571155 | 108854 | 108988 | unknown | IR/5’UTR ● |
**EhACAOrph3 | 137 | 94% | unknown | unknown | DS571258 | 10028 | 9892 | unknown | IR |
EhACAOrph4 | 122 | 90% | unknown | unknown | DS571205 | 43143 | 43022 | unknown | IR |
EhACAOrph5 | 129 | - | unknown | unknown | DS571332 | 15845 | 15717 | unknown | IR |
**EhACAOrph6 | 158 | - | unknown | unknown | DS571298 | 19208 | 19365 | unknown | IR |
EhACAOrph7 | 130 | - | unknown | unknown | DS571219 | 6608 | 6737 | unknown | IR |
EhACAOrph8 | 131 | 88% | unknown | unknown | DS571162 | 44597 | 44467 | unknown | IR ● |
EhACAOrph9 | 120 | 89% | unknown | unknown | DS571164 | 102500 | 102619 | unknown | IR ● |
EhACAOrph10 | 149 | 87% | unknown | unknown | DS571179 | 6844 | 6696 | unknown | EHI_093690 (−) ● |
EhACAOrph11 | 139 | 94% | unknown | unknown | DS571299 | 12352 | 12214 | unknown | EHI_099700 (−) |
EhACAOrph12 | 134 | 91% | unknown | unknown | DS571402 | 6404 | 6271 | unknown | EHI_067510 (−) ● |
**EhACAOrph13 | 137 | 95% | unknown | unknown | DS571501 | 3747 | 3883 | unknown | EHI_171990 (+) |
**EhACAOrph14 | 153 | 97% | unknown | unknown | DS571295 | 13935 | 14087 | unknown | EHI_082520 (−) |
*EhACAOrph15 | 148 | 91% | unknown | unknown | DS571166 | 95075 | 95222 | unknown | EHI_127390 (−) |