Table 7 U3 snoRNA genes in E. histolytica
From: Computational prediction and validation of C/D, H/ACA and Eh_U3 snoRNAs of Entamoeba histolytica
U3 snoRNA genes | Len (nt) | Seq (%) | Scaffold | Start | End | Homology Yeast/Human | Location |
|---|---|---|---|---|---|---|---|
A. U3 snoRNA genes | |||||||
Eh_U3a | 209 | 91% | DS571856 | 3136 | 3344 | snR17a/U3 U3 | IR |
Eh_U3b | 225 | 92% | DS571750 | 1819 | 1595 | snR17a/U3 U3 | IR |
Eh_U3c | 221 | 91% | DS571479 | 13861 | 14081 | snR17a/U3 U3 | IR |
Eh_U3d | 221 | 91% | DS571353 | 16563 | 16343 | snR17a/U3 U3 | IR |
Eh_U3e | 225 | 91% | DS571336 | 2559 | 2783 | snR17a/U3 U3 | IR |
B. Sequence of U3 snoRNA genes | |||||||
Eh_U3a | TAGACCGTACTCTTAGGATCATTTCTATAGTACAGTCAATCCATTATCCGTCTTAAAAATAACAACAAGACAATAGGATGAAGACTAAATAACCAACAACACCAACGGGAGATAAACAGTTGGAAACAAATGTACAATGAACGGCTTGAAACAATCTAAAGAAAGAAATTTCTAAAGATGGTTCAAGAGGTGAATGTTAGGGTGTCTGA | ||||||
Eh_U3b | TAGACCGTACTCTTAGGATCATTTCTATAGTACAGTCAATCCATTATCCGTCTTAAAAATAACAACAAGACAATAGGATGAAGACTAAATAACCAACAACACCAACGGGAGATAAACAGTTGGAAACAAATGTACAATGAACGGCTTGAAACAATCTAAAGAAAGAAATTTCCAAAGAAAGTTCAAGAGGTGATGTTAGGGTGTCTGACTATCTTTTTATGAAAT | ||||||
Eh_U3c | TAGACCGTACTCTTAGGATCATTTCTATAGTACAGTCAATCCATTATCCGTCTTAAAAATAACAACAAGACAATAGGATGAAGACTAAATAACCGACAGCACCAACGGGAGATAAACAGTTGGAAACAAATGTACAATGAACGGCTTGAAACAATCTAAGGAAAGAAATTTCCAAAGAAGGTTCAAGAGGTGATGTTAGGGTGTCTGACTATCTTTTTATG | ||||||
Eh_U3d | TAGACCGTACTCTTAGGATCATTTCTATAGTACAGTCAATCCATTATCCGTCTTAAAAATAACAACAAGACAATAGGATGAAGACTAAATAACCAACAACACCAACGGGAGATAAACAGTTGGAAACAAATGTACAATGAACGGCTTGAAACAATCTAAAGAAAGAAATTTCTAAAGATGGTTCAAGAGGTGATGTTAGGGTGTCTGACTATCTTTTTATG | ||||||
Eh_U3e | TAGACCGTACTCTTAGGATCATTTCTATAGTACAGTCAATCCATTATCCGTCTTAAAAATAACAACAAGACAATAGGATGAAGACTAAATAACCGACAGCACCAACGGGAGATAAACAGTTGGAAACAAATGTACAATGAACGGCTTGAAACAATCTAAGGAAAGAAAATTCTAAAGAAGGTTCAAGAGGTGATGTTAGGGTGTCTGACTATATTTTTACGAAAT | ||||||