Table 5 Comparisons between full-length cDNA transcripts and assembled transcripts
From: Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data
6,137 fl-cDNA transcripts | Trinity | Trans-ABySS | ||||
|---|---|---|---|---|---|---|
|  | AFSFASSS | AFSF + ASSS | AF + SF + AS + SS | AFSFASSS | AFSF + ASSS | AF + SF + AS + SS |
% of fl-cDNA hit | 92.94% | 92.83% | 92.62% | 91.33% | 90.39% | 89.69% |
(% of bases covered) | 82.84% | 82.64% | 81.68% | 79.52% | 76.71% | 74.09% |
% of fl-cDNA hit with at least 90% of its length | 92.06% | 92.05% | 92.13% | 90.83% | 89.73% | 88.90% |
(% of bases covered) | 82.08% | 82.02% | 81.14% | 79.24% | 76.40% | 73.79% |