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Table 8 Statistic of transcripts aligned to the draft diploid Ae . tauschii genome

From: Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data

 

Trinity

Trans-ABySS

Public ESTs

Trinity_AFSFASSS_2nd

 

AFSFASSS

AFSF + ASSS

AF + SF + AS + SS

AFSFASSS

AFSF + ASSS

AF + SF + AS + SS

  

Mean coverage

1.9

2.2

2.3

2

2.1

2.1

11.0

2.9

Coverage range

1 - 279

1 - 339

1 - 254

1 - 26

1 - 24

1 - 24

1 - 10,122

1 - 658

Bases covered

62,103,048

58,923,609

56,105,411

51,499,767

45,678,989

41,571,199

46,506,263

63,042,809

  1. Assembled transcripts were aligned to the draft genomic sequence. For the covered regions of the reference by assembled transcripts, mean coverage indicated how many transcripts covered on average for a certain region.
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BMC Genomics

ISSN: 1471-2164

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