Table 1 List of predicted genes from the 340,415-bp contig of R. rugosa orthologous to the Rdr1 locus of R. multiflora
From: Evolution of the Rdr1 TNL-cluster in roses and other Rosaceous species
No. | Position on the contig (bp) | Similarity as revealed by BLASTp (similar to GenBank accession number) | E-value |
|---|---|---|---|
1 | 6564-11898 | TIR-NBS-LRR (AEE43932.1) | 0.0 |
2 | 12848-11923 | None | - |
3 | 12986-18853 | Retrotransposon protein, Ty1-copia (ABF96803.1) | 0.0 |
4 | 20854-26772 | Retrotransposon protein, Ty1-copia (ABA98286.2) | 0.0 |
5 | 28978-37792 | TIR-NBS-LRR (AEE43932.1) | 0.0 |
6 | 41656-37934 | None | - |
7 | 45166-56998 | Neuroblastoma-amplified sequence (XP_003602296.1) | 0.0 |
8 | 60939-57122 | Major facilitator superfamily domain (XP_003526731.1) | 0.0 |
9 | 62610-61549 | None | - |
10 | 62646-64390 | rhodanese-like domain-containing protein (NP_567785.1) | 1e-102 |
11 | 68835-64533 | Vacuolar protein sorting-associated (XP_002274585.1) | 0.0 |
12 | 69119-71844 | Transcription factor B3 (ABN06173.1) | 7e-15 |
13 | 71912-76631 | Gag-pol polyprotein (BAK64102.1) | 0.0 |
14 | 76951-79409 | Transcription factor B3 (XP_003517920.1) | 2e-19 |
15 | 85078-79980 | TIR-NBS-LRR (AEE43932.1) | 0.0 |
16 | 88492-94115 | None | - |
17 | 94486-100495 | None | - |
18 | 104305-100835 | Mutator-like transposase (BAB10320.1) | 1e-102 |
19 | 109120-104792 | TIR-NBS-LRR (AEE43932.1) | 0.0 |
20 | 109935-111490 | None | - |
21 | 116498-111549 | Gag-pol polyprotein (AAO73527.1) | 2e-55 |
22 | 121170-117613 | Shikimate dehydrogenase (EEF45470) | 6e-12 |
23 | 127179-122701 | TIR-NBS-LRR (AEE43932.1) | 0.0 |
24 | 127707-139272 | Non-LTR retroelement reverse transcriptase (AAG13524) | 0.0 |
25 | 140854-139893 | None | - |
26 | 143524-147207 | Transcription factor B3 (XP_003535137.1) | 2e-08 |
27 | 148930-147755 | Phospholipase C (ACF93733.1) | 6e-12 |
28 | 153630-150256 | None | - |
29 | 161422-157057 | TIR-NBS-LRR (AEE43932.1) | 0.0 |
30 | 166328-163477 | LRR (AEE43932.2) | 4e-85 |
31 | 169607-170212 | None | - |
32 | 176508-171812 | TIR-NBS-LRR (AEE43932.1) | 0.0 |
33 | 176830-179287 | Transcription factor B3 (XP_003517920.1) | 2e-21 |
34 | 179594-182362 | Transcription factor B3 (XP_003517920.1) | 3e-18 |
35 | 188265-182622 | TIR-NBS-LRR (AEE43932.1) | 0.0 |
36 | 198290-192614 | TIR-NBS-LRR (AEE43932.1) | 0.0 |
37 | 199678-207935 | None | - |
38 | 211387-209495 | None | - |
39 | 217944-212928 | TIR-NBS-LRR (AEE43932.1) | 0.0 |
40 | 230339-218090 | Retrotransposon protein, Ty1-copia (ABF96803.1) | 0.0 |
41 | 232191-238449 | Non-LTR retroelement reverse transcriptase (AAB82639) | 0.0 |
42 | 239180-238929 | None | - |
43 | 239877-240955 | None | - |
44 | 245771-241137 | TIR-NBS-LRR (AEE43932.1) | 0.0 |
45 | 250194-245924 | Copia-type polyprotein (AAG51247.1) | 0.0 |
46 | 250788-253960 | None | - |
47 | 254886-254010 | None | - |
48 | 258861-257151 | ATP binding protein (XP_002515676.1) | 0.0 |
49 | 265170-261078 | AAA domain-containing protein (XP_003544721.1) | 0.0 |
50 | 266721-274192 | Yellow stripe-like protein (XP_003602315.1) | 0.0 |
51 | 278098-274211 | GTPase-activating protein (XP_003526739.1) | 0.0 |
52 | 283722-281796 | 6-phosphogluconolactonase (XP_002518214.1) | 5e-135 |
53 | 285094-286783 | Ubiquitin (XP_002530306.1) | 4e-88 |
54 | 288959-286931 | Aldo-keto reductase (XP_003602320.1) | 0.0 |
55 | 290639-289124 | Homeobox leucine zipper protein (AAD38144.1) | 1e-79 |
56 | 298129-297002 | None | - |
57 | 298247-299808 | Hypothetical protein (XP_003602325.1) | 5e-97 |
58 | 309056-299987 | TOPLESS-RELATED protein (XP_002275116.1) | 4e-105 |
59 | 309339-311499 | None | - |
60 | 318648-317787 | None | - |
61 | 325145-319916 | Serine/threonine protein kinase (NP_001234146.1) | 0.0 |
62 | 326294-328526 | None | - |
63 | 331756-329732 | UDP-N-acetylglucosamine transporter (XP_003531350.1) | 5e-48 |
64 | 335561-332977 | F-box protein (XP_003610959.1) | 2e-08 |
65 | 336756-340415 | Unnamed protein product (CBI23069.3) | 0.0 |