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Table 4 Genomic positions of salinity tolerance candidate genes in stickleback ( Gasterosteus aculeatus )

From: Genomic arrangement of salinity tolerance QTLs in salmonids: A comparative analysis of Atlantic salmon (Salmo salar) with Arctic charr (Salvelinus alpinus) and rainbow trout (Oncorhynchus mykiss)

Species

Locus

GenBank Accession

Source

GA Chr.

Mbp start

EV

%ID

ENSEMBL Annotation

ENSEMBL Gene No.

D. rerio

ATP1α1b

AY008375

Rajarao et al. 2001

i

21.699

0

78

atp1α1

ENSGACG00000014324

S. salar

CaSR-1

AY245445

unpublished

vii

22.314

0

81

CaSR

ENSGACG00000020687

 

CaSR-2

AY245443

unpublished

vii

22.314

0

81

CaSR

ENSGACG00000020687

 

CaSR-3

AY245444

unpublished

vii

22.314

0

81

CaSR

ENSGACG00000020687

S. salar

CFTRI

AF155237

Chen et al. 2001

xix

10.185

0

83

CFTR

ENSGACG00000009039

 

CFTRII

AF161070

Chen et al. 2001

xix

10.185

0

83

CFTR

ENSGACG00000009039

S. salar

cldn10e

BK006391

Tipsmark et al. 2008

i

20.691

-87

78

novel

ENSGACG00000013985

S. salar

COL1A1

CK873772

Seear et al. 2010

v

3.438

-95

86

COL1A1

ENSGACG00000003361

    

xi

0.910

-78

87

COL1A1

ENSGACG00000005143

S. salar

COL1A2

EG649361

Seear et al. 2010

x

9.261

-59

88

COL1A2

ENSGACG00000006511

S. salar

GH1

EU621898

Von Shalburg et al. 2008

xi

16.069

-21

66

novel

ENSGACG00000014829

 

GH2

EU621899

Von Shalburg et al. 2008

xi

16.069

-19

66

novel

ENSGACG00000014829

O. mykiss

GHR1

AY861675

Very et al. 2005

xiv

10.388

-161

69

GHR

ENSGACG00000017924

 

GHR2

AY751531

Very et al. 2005

xiv

10.388

-163

72

GHR

ENSGACG00000017924

S. salar

IGF2

EF432854

unpublished

xix

13.287

-121

83

IGF2

ENSGACG00000011125

S. salar

NKCC1a

DQ864492

Mackie et al. 2007

xiv

13.969

0

82

NKCC1

ENSGACG00000018343

    

xiii

19.857

0

76

NKCC1

ENSGACG00000014721

S. salar

SPARC

BT045906

Leong et al. 2010

iv

4.486

-171

83

SPARC

ENSGACG00000016847

  1. Sequences from zebrafish (Danio rerio), Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss) were aligned in ENSEMBL (v59 - v61)[60] (BLASTN algorithm; CDNA_ALL database; Distant homologies search sensitivity), against the genome of three-spined stickleback (GA) (BROADS1). Mbp (= bp x 10-6); EV = E-value exponent; %ID = percent similarity.