Skip to main content

Table 1 Development a large-scale oligonucleotide array for spruces ( Picea spp ): sequence information used to design oligonucleotide probes from Picea glauca and P. sitchensis sequences

From: Transcriptome profiling in conifers and the PiceaGenExpress database show patterns of diversification within gene families and interspecific conservation in vascular gene expression

Category

Number of probes

%

Probe designed1

Confirmation of P. glauca (Pgl) cDNA clone or other

1

11,214

35%

Pgl

Confirmed in Pgl and Psi cDNAs

2

12,251

39%

Pgl

Confirmed by Pgl 454 seqs or Psi cDNAs

3

4,840

15%

Psi

Confirmed by Pgl 454 seq

4

1,629

5%

Pgl

Unconfirmed but Pgl clones ≥ 2

5

1,670

5%

Psi

Psi full-length cDNA only (not found Pgl)

All

31,604

   
  1. 1Each probe was designed based on the sequence of P. glauca (Pgl) or P. Sitchensis (Psi).