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Table 1 Distribution of repeat classes in different ranges of genome size

From: Coevolution between simple sequence repeats (SSRs) and virus genome size

Range (kb)

Geno. No.1

Mono-

Di-

Tri-

Tetra-

Penta-

Hexa-

G .N. R.2

%3

O. V.4

G .N. R.

%

O. V.

G .N. R.

%

O. V.

G .N. R.

%

O. V.

G .N. R.

%

O. V.

G .N. R.

%

O. V.

~ 2

2

2

100

10

2

100

7

2

100

3

1

50

1

0

0

0

0

0

0

2 ~ 5

32

29

90.6

162

32

100

268

28

87.5

81

2

6.3

4

0

0

0

0

0

0

5 ~ 10

94

94

100

851

94

100

1585

90

95.7

363

9

9.6

11

1

1.1

1

1

1.1

1

10 ~ 30

78

78

100

1482

78

100

2822

77

98.7

626

15

19.2

17

2

2.6

4

2

2.6

2

30 ~ 100

15

15

100

1020

15

100

1183

15

100

342

4

26.7

5

2

13.3

3

1

6.7

1

100 ~ 410

36

36

100

16009

36

100

19587

36

100

5440

34

94.4

236

19

52.8

40

23

63.9

121

  1. 1 Genome number, e.g., the number of genomes is 32 with the size of 2 ~ 5 kb; 2 Genome number with corresponding repeat class, e. g., there are 29 virus genomes from which mononucleotide SSRs were extracted in the genome range of 2 ~ 5 kb; 3 Ratio of G. N. R. to Geno. No.; 4 Observed value of corresponding SSRs, e. g., a total of 162 mononucleotide repeat motifs were extracted from the genome range of 2 ~ 5 kb.