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Table 4 Binding site predictions for module 1 and module 2

From: Reconstructing differentially co-expressed gene modules and regulatory networks of soybean cells

Module

Consensus sequence

Motif logo

P-value

TF motif

TF family

1

AAAAAGAAA

1.68e-05

AZF1

BetaBetaAlpha – Zinc Finger

2

ACCCCACT

3.74e-04

YGR067C

BetaBetaAlpha – Zinc Finger

  1. Column 1 lists the putative consensus DNA binding motifs. Column 2 is the motif logo visualizing the information content of nucleotides (i.e. information content) at each position of the DNA motifs. Column 3 shows the p-value of the motifs. Column 4 is the predicted TF motifs that may bind to the DNA motifs. Column 5 is the family name of the TFs that may bind to the DNA motifs. The TF motifs were predicted by TomTom from the DNA binding motifs.