Skip to main content

Table 1 Summary of cold-regulated genes and significant DEGs between two genotypes at the seedling stage

From: Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background

Time course

Cold-responsive DEGs in C418

Cold-responsive DEGs in K354

K354 vs C418

 

Induced

Repressed

Sub-total

Induced

Repressed

Sub-Total

Up-

Down-

Sub-total

Control

-

-

-

-

-

-

308

209

517

2 h

192

40

232

38

45

83

308

246

554

6 h

234

52

286

175

68

243

276

193

469

12 h

397

106

503

363

108

471

284

211

495

24 h

894

181

1075

932

160

1092

312

182

494

48 h

1436

526

1962

1151

293

1444

294

189

483

  1. Note: DEGs were identified using the empirical criterion of more than 5-fold change and significant t tests (p < 0.05) based on three independent biological replicates. Induced or repressed genes were identified by comparing the transcription level of genes under stress condition with that under control conditions. Significantly up- or down-regulated DEGs between K354 and C418 were detected by comparing the transcription level of genes between two genotypes at the same time point.