Table 2 Comparison of the phylogenetic composition of bacteria
Bacterial phylum | Flying squirrel | Mouse | Cattle | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
OTU | OTU (%) | Clones | Clones (%) | OTU | OTU (%) | Clones | Clones (%) | OTU | OTU (%) | Clones | Clones (%) | ||
Acidobacteria | 0 | 0.00 | 0 | 0.00 | (0.48) | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 |
Actinobacteria | 9 | 3.60 | 40 | 4.17 | (8.19) | 6 | 1.71 | 20 | 1.79 | 1 | 0.15 | 1 | 0.04 |
Aquificae | 0 | 0.00 | 0 | 0.00 | (0.06) | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 |
Bacteroidetes | 0 | 0.00 | 0 | 0.00 | (2.60) | 56 | 15.95 | 325 | 29.02 | 92 | 13.63 | 347 | 12.34 |
Chlamydiae | 0 | 0.00 | 0 | 0.00 | (0.00) | 0 | 0.00 | 0 | 0.00 | 1 | 0.15 | 1 | 0.04 |
Chlorobi | 0 | 0.00 | 0 | 0.00 | (0.45) | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 |
Chloroflexi | 0 | 0.00 | 0 | 0.00 | (1.77) | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 |
Cyanobacteria | 0 | 0.00 | 0 | 0.00 | (1.48) | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 |
Deinococcus-Thermus | 0 | 0.00 | 0 | 0.00 | (0.39) | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 |
Firmicutes | 231 | 92.40 | 892 | 92.92 | (60.78) | 284 | 80.91 | 764 | 68.21 | 554 | 82.07 | 2083 | 74.08 |
Fusobacteria | 0 | 0.00 | 0 | 0.00 | (0.80) | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 |
Planctomycetes | 0 | 0.00 | 0 | 0.00 | (0.06) | 0 | 0.00 | 0 | 0.00 | 2 | 0.30 | 2 | 0.07 |
Proteobacteria | 5 | 2.00 | 10 | 1.04 | (11.85) | 3 | 0.85 | 9 | 0.80 | 7 | 1.04 | 352 | 12.52 |
Spirochaetes | 0 | 0.00 | 0 | 0.00 | (1.48) | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 |
Synergistetes | 0 | 0.00 | 0 | 0.00 | (0.00) | 0 | 0.00 | 0 | 0.00 | 1 | 0.15 | 1 | 0.04 |
Thermotogae | 0 | 0.00 | 0 | 0.00 | (0.77) | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 | 0 | 0.00 |
Verrucomicrobia | 1 | 0.40 | 14 | 1.46 | (8.77) | 0 | 0.00 | 0 | 0.00 | 2 | 0.30 | 2 | 0.07 |
Candidate division OP10 | 0 | 0.00 | 0 | 0.00 | (0.00) | 0 | 0.00 | 0 | 0.00 | 1 | 0.15 | 1 | 0.04 |
Candidate division TM7 | 0 | 0.00 | 0 | 0.00 | (0.00) | 1 | 0.28 | 1 | 0.09 | 6 | 0.89 | 9 | 0.32 |
Unclassified bacteria | 4 | 1.60 | 4 | 0.42 | (0.06) | 1 | 0.28 | 1 | 0.09 | 8 | 1.19 | 13 | 0.46 |
Total | 250 | 100.00 | 960 | 100.00 | (100.00) | 351 | 100.00 | 1120 | 100.00 | 675 | 100.00 | 2812 | 100.00 |