Table 3 Orthologous genes in the KN400 and PCA strains that have the highest level of protein-changing single nucleotide polymorphisms per kb (proteins of unknown function not shown)
Gene | Annotation | PCA ortholog | Non-synonymous SNP per 1000 bases | Total SNP |
|---|---|---|---|---|
KN400_0176 | quinoline oxidoreductase, small subunit protein | GSU0200 | 17.0 | 25 |
KN400_0177 | quinoline oxidoreductase, large subunit protein | GSU0201 | 21.6 | 174 |
KN400_0192 | FMN-cofactor binding protein | GSU0217 | 12.4 | 20 |
KN400_0193 | cytochrome c oxidase synthesis (SCO) factor | GSU0218 | 14.4 | 32 |
KN400_0196 | cytochrome c oxidase, subunit IV | GSU0221 | 13.8 | 11 |
KN400_0197 | cytochrome c oxidase, subunit II | GSU0222 | 12.0 | 44 |
KN400_0198 | cytochrome c oxidase assembly factor | GSU0223 | 18.5 | 43 |
KN400_0202 | DNA methyltransferase | GSU0227 | 19.6 | 53 |
KN400_0225 | sensor histidine kinase | GSU0253 | 20.1 | 118 |
KN400_0281 | DnaJ domain protein | GSU0313 | 15.6 | 21 |
KN400_0418 | ribonuclease D | GSU0443 | 20.1 | 64 |
KN400_0545 | DNA-3-methyladenine glycosylase I | GSU0567 | 19.1 | 28 |
KN400_0547 | nicotinamidase-related cysteine hydrolase | GSU0569 | 21.9 | 29 |
KN400_0597 | cytochrome c (OmcE) | GSU0618 | 25.8 | 44 |
KN400_0681 | cytochrome c biogenesis, ResB | GSU0704 | 12.8 | 36 |
KN400_0803 | sensor histidine kinase | GSU0822 | 13.7 | 68 |
KN400_0811 | efflux pump, RND family, membrane fusion protein | GSU0829 | 40.2 | 116 |
KN400_0818 | response regulator | GSU0837 | 12.2 | 8 |
KN400_0880 | 3-oxoalanine-generating family protein | GSU0897 | 17.1 | 55 |
KN400_0883 | SAM-dependent methyltransferase | GSU0900 | 19.1 | 40 |
KN400_0885 | response receiver | GSU3516 | 12.8 | 17 |
KN400_0887 | sensor histidine kinase | GSU3518 | 16.8 | 68 |
KN400_0892 | pyranopterin cofactor biosynthesis, MoeB | GSU0907 | 34.3 | 44 |
KN400_0893 | pyranopterin cofactor biosynthesis, MoaD | GSU0908 | 32.0 | 22 |
KN400_0899 | ATP-dependent RNA helicase RhlE | GSU0914 | 17.9 | 105 |
KN400_0908 | ABC transporter, ATP-binding protein | GSU0922 | 12.4 | 75 |
KN400_0914 | zinc-dependent peptidase, M16 family | GSU0928 | 16.0 | 77 |
KN400_0950 | protease | GSU0969 | 16.3 | 73 |
KN400_0995 | OmpA family outer membrane lipoprotein | GSU1013 | 15.0 | 37 |
KN400_0996 | smr domain protein | GSU1014 | 26.4 | 40 |
KN400_1013 | methyl-accepting chemotaxis sensory transducer | GSU3523 | 19.6 | 153 |
KN400_1014 | methyl-accepting chemotaxis sensory transducer | GSU1035 | 15.2 | 107 |
KN400_1117 | methyl-accepting chemotaxis sensory transducer | GSU1141 | 14.5 | 72 |
KN400_1307 | cytochrome c | GSU1334 | 16.7 | 81 |
KN400_1319 | sulfate ABC transporter, periplasmic sulfate-binding | GSU1346 | 20.7 | 58 |
KN400_1320 | sulfate ABC transporter, membrane protein CysU | GSU1347 | 16.8 | 31 |
KN400_1510 | transcriptional regulator, MarR family | GSU1483 | 49.0 | 59 |
KN400_1862 | membrane-associated phosphatase, PAP2_like_5 family | GSU1840 | 12.2 | 15 |
KN400_1865 | RNA exonuclease | GSU1843 | 18.2 | 58 |
KN400_1866 | IPT/TIG domain protein | GSU1844 | 12.5 | 107 |
KN400_1884 | IPT/TIG domain protein | GSU1858 | 25.1 | 173 |
KN400_2002 | exopolysaccharide synthesis exosortase | GSU1979 | 12.6 | 38 |
KN400_2006 | protein tyrosine kinase | GSU1983 | 14.0 | 27 |
KN400_2106 | D-glycero-D-mannoheptose-1,7-bisphosphate phosphatase | GSU2084 | 12.2 | 20 |
KN400_2110 | glycosyltransferase, group 2 family protein | GSU2088 | 57.0 | 139 |
KN400_2282 | trehalose-6-phosphatase | GSU2336 | 26.6 | 41 |
KN400_2284 | sodium/proton antiporter complex Mrp, protein G | GSU2338 | 43.8 | 52 |
KN400_2286 | sodium/proton antiporter complex Mrp, protein E | GSU2340 | 40.2 | 62 |
KN400_2287 | sodium/proton antiporter complex Mrp, protein D | GSU2341 | 16.5 | 106 |
KN400_2288 | sodium/proton antiporter complex Mrp, protein C | GSU2342 | 46.6 | 18 |
KN400_2382 | ATP-dependent protease, putative | GSU2433 | 12.2 | 77 |
KN400_2399 | peptide methionine sulfoxide reductase | GSU2451 | 14.5 | 19 |
KN400_2420 | TPR domain protein | GSU2476 | 17.6 | 74 |
KN400_2445 | YVTN family beta-propeller domain protein | GSU3586 | 16.6 | 59 |
KN400_2449 | cytochrome c (OmcS) | GSU2504 | 15.4 | 51 |
KN400_2452 | sensor histidine kinase | GSU2507 | 13.9 | 70 |
KN400_2454 | TPR domain protein | GSU2508 | 24.5 | 96 |
KN400_2457 | sensor diguanylate cyclase/phosphoesterase | GSU2511 | 17.6 | 142 |
KN400_2460 | cytochrome c | GSU2513 | 31.8 | 27 |
KN400_2624 | 2-dehydropantoate 2-reductase | GSU2683 | 38.5 | 104 |
KN400_2644 | transcriptional regulator, TetR family | GSU2698 | 13.9 | 33 |
KN400_2649 | molybdopterin-molybdenum ligase | GSU2703 | 12.3 | 59 |
KN400_2658 | fibronectin type III domain protein | GSU2715 | 48.7 | 294 |
KN400_2660 | hydrogenase, bidirectional NAD-reducing, protease | GSU2717 | 30.8 | 35 |
KN400_2668 | cytochrome c | GSU2725 | 25.4 | 31 |
KN400_2716 | transcriptional regulator, MerR family | GSU2779 | 18.0 | 30 |
KN400_2747 | transcriptional regulator, Fur family | GSU2809 | 30.6 | 35 |
KN400_2750 | glutaredoxin family protein | GSU2812 | 89.8 | 60 |
KN400_2997 | NADPH ferredoxin oxidoreductase (FNOR) beta subunit | GSU3058 | 15.6 | 32 |
KN400_3000 | squalene cyclase domain protein | GSU3061 | 12.3 | 107 |
KN400_3006 | UDP-N-acetylenolpyruvylglucosamine reductase | GSU3067 | 21.1 | 58 |
KN400_3214 | cytochrome c | GSU3274 | 28.8 | 32 |
KN400_3301 | sensor histidine kinase | GSU3357 | 22.2 | 146 |
KN400_3348 | OmpJ-related porin | GSU3403 | 29.9 | 97 |
KN400_3368 | dihydrolipoamide dehydrogenase-related protein | GSU3424 | 16.4 | 86 |