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Table 3 Effects of sequencing depth on TPR at different n and depths

From: Efficient experimental design and analysis strategies for the detection of differential expression using RNA-Sequencing

Depth

n = 2

n = 3

n = 4

n = 6

n = 8

n = 12

25%

1.57

6.24

10.40

19.18

26.08

35.41

50%

2.58

7.63

12.40

22.34

29.66

39.16

75%

3.01

8.47

13.16

23.44

31.57

40.65

100%

3.26

8.95

13.95

24.30

32.72

41.57

  1. Effects of sequencing depth on TPR values for a subset of our tested depths = 25%, 50%, 75% & 100%.
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BMC Genomics

ISSN: 1471-2164

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