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Table 1 Antagonistically linked traits

From: Network-based SNP meta-analysis identifies joint and disjoint genetic features across common human diseases

Disease

Abbr.

Antagonistically Linked Traits (Loci)

#

CROHN DISEASE

CD

AST (17q12); T1D (1p13, 16p11); VIT (1p13); T2D (2p21); RA (1p13); SLE (1p13); PS (19p13); MS (17q21)

8

ASTHMA

AST

CD (17q12); UC (17q12); BLC (17q12); RA (17q12); PS (5q31)

5

GLIOMA

GLI

COR (9p21); T2D (9p21); GLA (9p21); IPF (5p15) ; TN (5p15)

5

ARTHRITIS, RHEUMATOID

RA

AST (17q12); MS (20q13); CD (1p13)

3

MULTIPLE SCLEROSIS

MS

RA (20q13); HCC (1p36); CD (17q21)

3

COLITIS, ULCERATIVE

UC

AST (17q12); CeD (1p36); SLE (1q23)

3

LUNG NEOPLASMS

LN

PN (5p15); IPF (5p15); TN (5p15)

3

TESTICULAR NEOPLASMS

TN

GLI (5p15); LN (5p15)

2

VITILIGO

VIT

CD (1p13); MEL (11q14)

2

DIABETES MELLITUS, TYPE 1

T1D

CD (1p13, 16p11); IBD (1p13)

2

DIABETES MELLITUS, TYPE 2

T2D

GLI (9p21); CD (2p21)

2

CELIAC DISEASE

CeD

UC (1p36); CRC (3q26)

2

IDIOPATHIC PULMONARY FIBROSIS

IPF

GLI (5p15); LN (5p15)

2

PSORIASIS

PS

AST (5q31); CD (19p13)

2

LUPUS ERYTHEMATOSUS, SYSTEMIC

SLE

CD (1p13); UC (1q23)

2

GLAUCOMA

GLA

GLI (9p21)

1

MELANOMA

MEL

VIT (11q14)

1

PANCREATIC NEOPLASMS

PN

LN (5p15)

1

ALCOHOLISM

ALC

HNN (12q24)

1

COLORECTAL NEOPLASMS

CRC

CeD (3q26)

1

INFLAMMATORY BOWEL DISEASES

IBD

T1D (16p11)

1

CARCINOMA, HEPATOCELLULAR

HCC

MS (1p36)

1

LIVER CIRRHOSIS, BILIARY

BLC

AST (17q12)

1

CORONARY DISEASE

COR

GLI (9p21)

1

HEAD AND NECK NEOPLASMS

HNN

ALC (12q24)

1

  1. Listed are diseases and the traits that share an antagonistic variant with the respective disorder. In the first column the considered disease is given. The second column specifies the abbreviation of the disorder in the first column. The third column contains the abbreviated diseases as defined in column two which have an antagonistic link to the disorder in column one, followed by the chromosomal location of the antagonistically associated variant(s) in parentheses. The last column lists the count of traits antagonistically linked to the disorder in column one. For a more detailed listing see Additional file2: Table S1.