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Table 1 Cluster assignments for genes with alternate TSSs

From: Combinatorial control of temporal gene expression in the Drosophila wing by enhancers and core promoters

Gene

TSS type

Cluster

TSS type

Cluster

Alh

Non-DPE

12

DPE

23

br

Non-DPE

9,10*

DPE

21

CG17292

Non-DPE

1

DPE

3

CG1906

DRE

5,15

Non-DRE

3

CG32158

DRE

25

Non-DRE

3

ATP-alpha

DRE

5

Non-DRE

23

Mod(mdg4)

DRE

5,18

Non-DRE

16,19*

Rtnl1

DRE

26

Non-DRE

3,9

CG4390

DRE

13

Non-DRE

3

  1. A small number of genes in our data set employ multiple TSSs that are associated with different types of core promoters. Transcripts associated with these genes often exhibited different temporal patterns of expression (i.e., were assigned to different clusters), which was predicted by the type of promoter, in all except for two transcripts (indicated by an asterisk).