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Table 3 Unmapped and unaligned regions in T. parva Muguga genome by pair-wise comparisons to the four genomes sequenced in this study

From: High-resolution genotyping and mapping of recombination and gene conversion in the protozoan Theileria parva using whole genome sequencing

 

Marikebuni

Uganda

MugugaMarikebuni

MugugaUganda

Unmapped bases 1

209716

943493

186820

165122

Unmapped and unaligned bases (% of unmapped bases)2

124013 (59%)

548856 (58%)

66465 (35%)

111753 (67%)

Number of genes with unmapped and unaligned bases

59

37

29

57

  1. 1 Unmapped by 454 reads using gsMapper.
  2. 2 Unmapped by 454 reads using gsMapper, unaligned by de novo assembled contigs using MUMmer.