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Table 6 Mapping of the pig cDNA clones sequenced in this study on pig chromosomes

From: Large-scale sequencing based on full-length-enriched cDNA libraries in pigs: contribution to annotation of the pig genome draft sequence

Chromosome

Forward

Reverse

Total

Clones

Loci

Clones

Loci

Clones

Loci

1

1128 (164)

560 (134)

1197 (133)

594 (112)

2325 (297)

1154 (246)

2

1144 (138)

564 (123)

1180 (161)

563 (134)

2324 (299)

1127 (257)

3

744 (97)

380 (87)

871 (121)

468 (99)

1615 (218)

848 (186)

4

748 (88)

366 (71)

793 (96)

385 (81)

1541 (184)

751 (152)

5

710 (86)

310 (63)

685 (77)

313 (65)

1395 (163)

623 (128)

6

1184 (174)

552 (133)

1040 (130)

539 (115)

2224 (304)

1091 (248)

7

1013 (117)

437 (98)

1118 (125)

397 (97)

2131 (242)

834 (195)

8

563 (69)

267 (58)

393 (50)

209 (44)

956 (119)

476 (102)

9

699 (94)

339 (72)

673 (85)

339 (75)

1372 (179)

678 (147)

10

409 (48)

167 (37)

362 (37)

169 (32)

771 (85)

336 (69)

11

225 (26)

119 (25)

237 (22)

129 (20)

462 (48)

248 (45)

12

723 (89)

334 (76)

667 (68)

328 (60)

1390 (157)

662 (136)

13

922 (124)

431 (101)

890 (93)

467 (80)

1812 (217)

898 (181)

14

894 (101)

405 (80)

920 (116)

424 (90)

1814 (217)

829 (170)

15

568 (79)

281 (64)

518 (61)

247 (55)

1086 (140)

528 (119)

16

266 (35)

137 (26)

252 (39)

123 (35)

518 (74)

260 (61)

17

607 (70)

212 (59)

365 (47)

190 (38)

972 (117)

402 (97)

18

325 (32)

144 (29)

354 (38)

151 (30)

679 (70)

295 (59)

X

364 (56)

195 (49)

402 (73)

203 (55)

766 (129)

398 (104)

Y

5 (0)

2 (0)

1 (0)

1 (0)

6 (0)

3 (0)

Unplaced scaffolds

1854 (308)

747 (156)

1417 (162)

706 (135)

3271 (470)

1453 (291)

Total

15,095 (1995)

6949 (1541)

14,335 (1734)

6945 (1452)

29,430 (3729)

13,894 (2993)

  1. Numbers of cDNA clones and the corresponding independent loci mapped on the pig genome are shown for each chromosome. “Forward” and “Reverse” indicate that the cDNA clones are aligned on the chromosomes in the orientation from pter to qter and from qter to pter, respectively. Numbers in parentheses show clones derived from pigs cloned from a female subjected to genome sequencing by the International Swine Genome Sequencing Consortium (Duroc 2–14).