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Table 1 The candidate genes nominated by expression difference and/or coding polymorphisms for skeletal muscle weight QTL (Skmw) affecting muscle weight between the LG/J (L) and SM/J (S) strains

From: Resolving candidate genes of mouse skeletal muscle QTL via RNA-Seq and expression network analyses

Gene

Chr

QTL

Type

BC029722

2

Skmw21

L < S

Uqcc

2

Skmw21

L > S

Adig

2

Skmw22

L < S

Ppp1r16b

2

Skmw22

L < S

Fam83d

2

Skmw22

L > S

Gm826

2

Skmw22

L < S

Chd6

2

Skmw22

L > S

Rasl11b

5

Skmw24

L < S

Kdr

5

Skmw24

L < S L1176F

Ppat

5

Skmw24

L > S

Osbpl3

6

Skmw25

L < S

Mrpl19

6

Skmw26

L < S

Htra2

6

Skmw26

T449D

Adamts9

6

Skmw27

P699A

Gm15737

6

Skmw27

L < S

Rybp

6

Skmw28

L > S

Il17re

6

Skmw29

L > S

Irak2

6

Skmw29

L > S

Sec13

6

Skmw29

K87M

Plbd1

6

Skmw31

L < S

Mgp

6

Skmw31

L<S Q55L

Rerg

6

Skmw31

L < S

Synm

7

Skmw32

R946Q P835S

Pgpep1l

7

Skmw32

L < S

Mesdc2

7

Skmw33

L < S

Fah

7

Skmw33

L > S

Nox4

7

Skmw33

L < S

Prss23

7

Skmw33

L > S

Mical2

7

Skmw34

L > S

2310014F06Rik

7

Skmw34

L < S

Arntl

7

Skmw34

L > S

Fgfr2

7

Skmw35

L > S

Irs2

8

Skmw36

L < S

Col4a1

8

Skmw36

L < S

Col4a2

8

Skmw36

L < S

Lamp1

8

Skmw36

R294H

Grtp1

8

Skmw36

L < S

Adprhl1

8

Skmw36

L > S

Tfdp1

8

Skmw36

R302H

2610019F03Rik

8

Skmw36

L > S

Snord13

8

Skmw37

L > S

Dlc1

8

Skmw37

L < S

Lphn1

8

Skmw39

L > S

Podnl1

8

Skmw39

L > S

Adcy1

11

Skmw40

L > S

Tns3

11

Skmw40

T1067M

Rhbdf1

11

Skmw42

R42W

Hba-a2

11

Skmw42

L > S

Stk10

11

Skmw42

L < S

  1. Type indicates whether gene is more (>) or less (<) abundant, or position and swapped amino acids (substitutions in bold are more likely to affect protein function than those in regular font).