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Table 1 General characteristics of the LPP-1 plasmids of Pantoea strains included in the study

From: The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification

Group

#

Organism

Strain

Isolated from

Lifestyle

Sequence Status

Reference

Plasmid size (kb)

G+C (%)

# CDS

I

1

P. agglomerans

E325

Apple

Biocontrol

Draft

[a]

535.8

53.52

552

I

2

P. agglomerans

IG1

Wheat

Saprophyte

Draft

[58]

616.4

52.65

578

I

3

P. agglomerans

MP2

Termite

Symbiont

Draft

[b]

560.6

53.18

527

I

4

P. agglomerans

SL1_M5

Woodwasp

Symbiont

Draft

[11]

526.2

53.53

499

I

5

P. anthophila

Sc1

Cotton

Pathogen

Complete

[59]

411.4

56.27

376

I

6

P. eucalyptii

αB

Bark beetle

Symbiont

Draft

[c]

499.6

54.2

492

I

7

P. vagans

C9-1

Apple

Biocontrol

Complete

[60]

529.7

53.87

474

I

8

P. vagans

MP7

Termite

Symbiont

Draft

[b]

508.6

53.98

453

II

1

P. ananatis

AJ13355

Soil

Saprophyte

Complete

[56]

321.7

51.97

272

II

2

P. ananatis

B1-9

Onion

Saprophyte

Draft

[57]

314.4

51.68

267

II

3

P. ananatis

BD442

Maize

Pathogen

Draft

[a]

352.8

51.13

320

II

4

P. ananatis

LMG20103

Eucalyptus

Pathogen

Complete

[54]

305.7

51.76

259

II

5

P. ananatis

LMG2665T

Pineapple

Pathogen

Draft

[a]

317.1

52.11

270

II

6

P. ananatis

LMG5342

Human

Pathogen

Complete

[55]

302.6

51.47

255

II

7

P. ananatis

PA4

Onion

Pathogen

Draft

[a]

312.7

52.17

263

II

8

P. ananatis

PA13

Rice

Pathogen

Draft

[53]

280.8

52.25

238

II

9

P. stewartii subsp. indologenes

LMG2632T

Foxtail millet

Pathogen

Draft

[a]

301.9

51.44

265

II

10

P. stewartii subsp. stewartii

DC283

Maize

Pathogen

Draft

[c]

294.6

51.51

267

III

1

Pantoea sp.

At-9b

Leaf cutter ant

Symbiont

Complete

[c]

793.9

54.58

750

III

2

P. cypripedii

LMG2657T

Orchid

Pathogen

Draft

[a]

645.5

53.78

571

  1. The host or site of isolation, the lifestyle as symbiont, saprophyte, biocontrol agent or pathogen and the status of the genome sequence for each of the 20 Pantoea strain included in this study, as well as the LPP-1 group they belong to are shown. Characteristics of the LPP-1 plasmids, including the genome size (in kilobases), G+C content (%) and number of protein coding sequences (CDS) encoded on each LPP-1 plasmid are given. In the Reference column [a] denotes those genome sequences which were obtained in our laboratories, while [b] denotes those provided by Poulsen et al., University of Copenhagen, Denmark. References labelled [c] are those draft or complete genomes that are publically available in the NCBI database, which have not been published. These include Pantoea sp. At-9b (NC_014838) and Pantoea eucalypti αB (AEDL00000000) submitted by Lucas et al. and P. stewartii subsp. stewartii DC283 (AHIE00000000) submitted by Biehl et al.