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Table 1 Summary of marker validation outcomes for the indel and SNP markers (CAPS and HRM) generated in this study

From: A Toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.)

Marker

Number assessed

Amplified

Multi-locus (%)

Polymorphic between Nasik Red and CUDH2150 (%)

Mapped in F2

Indel

22

21 (95%)

0

11 (50%)

8 (36%)

CAPS

167

144 (86%)

32 (19%)

90 (54%)

57 (34%)

HRM

187

172 (92%)

33 (18%)

104 (56%)

16 (9%)

Total

376

337 (90%)

65(19%)

195(58%)

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