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Table 2 Functional motifs of apple Hsfs

From: Heat shock transcriptional factors in Malus domestica: identification, classification and expression analysis

Gene name

DBD

HR-A/B

NLS

NES

AHA

MdHsfA1a

39-132

154-220

(242) NKKRRLKK

(502) MDNLTEKMG

AHA (454) DIEAFLKDWDD

MdHsfA1b

17-152

174-240

(264) NKKRRLPR

(529) MNHITEQM

AHA (482) DIFWEQFLTAS

MdHsfA1c

16-156

173-243

(268) NKKRRLPR

(533) MNHITEQMQ

AHA (486) DIFWEQFLTAS

MdHsfA1d

103-196

217-284

(307) NKKRRLKR

(563) MDNLTEKMG

AHA (516) DIEAFLKDWDD

MdHsfA2a

30-132

147-213

(228) KNRK-X7-RKRR

(368) LLDQMGYQ

AHA1 (318) ETIWEELWSD AHA2 (360) DWGKDLQD

MdHsfA2b

38-131

145-212

(227) KNR-X6-RKRR

(365) LVDQMGYL

AHA1 (315) ETIWEELWSD AHA2 (355) DWGEDLQD

MdHsfA3a

99-209

226-285

(297) KTRRKFVK

nd

AHA1 (431) EDIWSMGFGV AHA2 (450) ELWGNPVNY AHA3(470) LDVWDIGPLQ AHA4 (486) IDKWPAHDS

MdHsfA3b

99-232

253-312

(328) KDIGSSRVRRKFVK

nd

nd

MdHsfA3c

99-244

265-324

(340) KDIGSSRVRRKFVK

nd

AHA1 (500) EDIWSMNFDV AHA2 (518) NELWGNPXNY AHA3 (539) LDVWDIDPLQ AHA4 (555) INKWPAHES

MdHsfA4a

10-103

123-190

(208) RKRRLPR

(407) LTEQMGHL

AHA1 (252) LTFWEDTIHD AHA2 (356) DGFWEQFLTE

MdHsfA5a

12-105

116-183

(194) RK-X10-KKRR

(477) AETLTL

AHA (431) DVFWEQFLTE

MdHsfA5b

12-105

117-183

(194) RK-X10-KKRR

(477) AETLTL

AHA (431) DVFWEQFLTE

MdHsfA8a

18-111

129-199

(177) RNRLR

(389) TEQMGHL

AHA (308) DGAWEQFLLA

MdHsfA8b

18-111

127-196

(172) RLLRNR

nd

AHA (306) DGAWEQLLLG

MdHsfA9b

139-239

241-308

(324) KR-X8-KRRR

(258) LKADQD

nd

MdHsfA9b

139-239

241-308

(324) KR-X8-KRRR

(258) LKADQD

nd

MdHsfB1a

6-99

142-191

(246) KGDEKMKGKK

nd

nd

MdHsfB1b

2-35

78-127

(181) KGEEKMKGKK

(159) LDMEGG

nd

MdHsfB2a

22-115

154-197

(167) RLRK

nd

nd

MdHsfB3a

19-112

149-194

(223) RKRKR

(208) PKLFGVRLE

nd

MdHsfB3b

22-116

149-194

(179) KRKCK (223) RKRKR

(208) LKLFGVRLE

nd

MdHsfB4a

21-114

183-239

(325) KNTK-X9-KKR

(366) LEKDDLGLQLM

nd

MdHsfB4b

21-114

180-240

(327) KNTK-X9-KKR

(368) LEKDDLGLHLM

nd

MdHsfC1a

7-100

119-171

(195) KKRR

nd

nd

MdHsfC1b

9-102

128-180

( 204) KKRR

nd

nd

  1. Number in brackets indicates the position of the first amino acid present in the putative nuclear localization signal (NLS), nuclear export signal (NES) and activator (AHA) motifs in the C-terminal domains. nd, no motifs detectable by sequence similarity searches.
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