Skip to main content

Table 1 A list of selected up-regulated genes and their functional categories

From: Transcriptional and metabolomic analysis of Ascophyllum nodosum mediated freezing tolerance in Arabidopsis thaliana

No

Locus

FC

Gene ontology class

Gene annotation detail

Response to stress and/or stress stimuli

1

At1g55920

2

response to cold

AtSerat2;1_SAT1_SAT5__AtSerat2;1 (SERINE ACETYLTRANSFERASE 1)

2

At3g22840

1.94

response to cold

ELIP1_ELIP__ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN); chlorophyll binding

3

At1g10760

1.6

cold acclimation

SEX1_GWD_SOP__SEX1 (STARCH EXCESS 1)

4

At1g09780

1.5

response to cold

2,3-biphosphoglycerate-independent phosphoglyceratemutase, putative/phosphoglyceromutase, putative

5

At4g26080

1.73

response to heat

ABI1__ABI1 (ABA INSENSITIVE 1); calcium ion binding/protein serine/threonine phosphatase

6

At4g26850

1.61

response to heat

VTC2__VTC2 (VITAMIN C DEFECTIVE 2)

7

At1g73330

3.09

response to water deprivation

ATDR4__ATDR4 (Arabidopsis thaliana drought-repressed 4)

8

At3g11410

2.61

response to water deprivation

AHG3_ATPP2CA__AHG3/ATPP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding/protein serine/threonine phosphatase

9

At5g62470

2.25

response to salt stress

AtMYB96_mybcov1_MYB96__MYB96 (myb domain protein 96); DNA binding/transcription factor

10

At3g61890

2.21

response to salt stress

ATHB-12_ATHB12__ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 12); transcription factor

11

At2g46680

1.93

response to water deprivation

ATHB-7_ATHB7__ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7)

12

At5g57050

1.87

response to osmotic stress

ABI2__ABI2 (ABA INSENSITIVE 2)

13

At5g59780

1.84

response to salt stress

AtMYB59_MYB59__MYB59 (myb domain protein 59); DNA binding/transcription factor

14

At5g37500

1.82

response to water deprivation

GORK__GORK (GATED OUTWARDLY-RECTIFYING K+ CHANNEL); cyclic nucleotide binding/inward rectifier potassium channel/outward rectifier potassium channel

15

At4g34990

1.80

response to salt stress

AtMYB32__AtMYB32 (myb domain protein 32); DNA binding/transcription factor

16

At1g29395

1.76

response to water deprivation

COR414-TM1__COR414-TM1 (cold regulated 414 thylakoid membrane 1)

17

At1g02930

1.70

response to water deprivation

ATGSTF6_ATGSTF3_ERD11_GST1_GSTF6__ATGSTF6 (EARLY RESPONSIVE TO DEHYDRATION 11); glutathione transferase

18

At3g19580

1.68

hyperosmotic salinity response

AZF2__AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2)

19

At3g08720

1.67

response to salt stress

ATS6K2_S6K2_ATPK19_ATPK2__ATPK19 (ARABIDOPSIS THALIANA PROTEIN KINASE 19); kinase

20

At2g30870

1.65

response to water deprivation

ATGSTF10_ATGSTF4_ERD13__ATGSTF10 (EARLY DEHYDRATION-INDUCED 13); glutathione transferase

21

At4g30660

1.64

hyperosmotic salinity response

hydrophobic protein, putative/low temperature and salt responsive protein, putative

22

At3g55730

1.61

response to salt stress

AtMYB109_MYB109__MYB109 (myb domain protein 109); DNA binding/transcription factor

23

At3g03190

1.57

response to oxidative stress

ATGSTF11_ATGSTF6__ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11); glutathione transferase

24

At5g01600

1.74

response to hydrogen peroxide

ATFER1__ATFER1 (FERRETIN 1); ferric iron binding

25

At2g16060

1.87

response to hypoxia

AHB1_ARATH GLB1_ATGLB1_GLB1_NSHB1__AHB1 (ARABIDOPSIS HEMOGLOBIN 1)

26

At1g05200

1.56

response to light stimulus

ATGLR3.4_GLR3.4_GLUR3__ATGLR3.4 (Arabidopsis thaliana glutamate receptor 3.4)

27

At5g64330

1.59

response to light stimulus

NPH3_JK218_RPT3__NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3)

28

At1g21590

1.63

response to stress

protein kinase family protein

29

At2g35980

1.56

response to stress

YLS9_NHL10__YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)

30

At2g38470

2.0

defense response to fungus

WRKY33__WRKY33 (WRKY DNA-binding protein 33); transcription factor

31

At1g12820

1.87

response to molecule of bacterial origin

AFB3__AFB3 (AUXIN SIGNALING F-BOX 3); auxin binding/ubiquitin-protein ligase

32

At2g19190

1.80

defense response to bacterium

FRK1__FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1); kinase

33

At5g52450

1.73

response to nematode

MATE efflux protein-related

34

At4g12480

1.65

defense response to fungus

pEARLI 1__pEARLI 1; lipid binding

35

At1g24020

1.63

response to biotic stimulus

MLP423__MLP423 (MLP-LIKE PROTEIN 423)

36

At2g24570

1.63

defense response to bacterium

WRKY17__WRKY17 (WRKY DNA-binding protein 17); transcription factor

37

At5g64120

1.58

defense response to fungus

peroxidase, putative

38

At5g58600

1.55

defense response to fungus

PMR5__PMR5 (POWDERY MILDEW RESISTANT 5)

39

At3g11660

1.54

defense response to virus

NHL1__NHL1 (NDR1/HIN1-like 1)

40

At5g50200

2.53

response to wounding

ATNRT3.1_NRT3.1_WR3__WR3 (WOUND-RESPONSIVE 3); nitrate transmembrane transporter

41

At5g13930

1.51

response to wounding

CHS_TT4__ATCHS/CHS/TT4 (CHALCONE SYNTHASE); naringenin-chalcone synthase

Sugar Accumulation

1

At1g56600

3.19

carbohydrate biosynthetic process

ATGOLS2 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 2); transferase, transferring glycosyl groups/transferase, transferring hexosyl groups

2

At5g18470

2.63

sugar binding

curculin-like (mannose-binding) lectin family protein

3

At1g02460

2.46

carbohydrate metabolic process

glycoside hydrolase family 28 protein/polygalacturonase (pectinase) family protein

4

At3g46970

1.85

carbohydrate metabolic process

ATPHS2/PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2); phosphorylase/transferase, transferring glycosyl groups

5

At4g19810

1.84

carbohydrate metabolic process

glycosyl hydrolase family 18 protein

6

At1g48100

1.84

carbohydrate metabolic process

glycoside hydrolase family 28 protein/polygalacturonase (pectinase) family protein

7

At5g41670

1.79

pentose-phosphate shunt

6-phosphogluconate dehydrogenase family protein

8

At5g66460

1.75

carbohydrate metabolic process

(1–4)-beta-mannanendohydrolase, putative

9

At3g18080

1.72

carbohydrate metabolic process

glycosyl hydrolase family 1 protein

10

At2g44450

1.68

carbohydrate metabolic process

glycosyl hydrolase family 1 protein

11

At4g27830

1.62

carbohydrate metabolic process

glycosyl hydrolase family 1 protein

12

At4g09020

1.61

starch catabolic process; alpha-amylase activity

ATISA3_ISA3__ATISA3/ISA3 (ISOAMYLASE 3); alpha-amylase

13

At3g61490

1.61

carbohydrate metabolic process

glycoside hydrolase family 28 protein/polygalacturonase (pectinase) family protein

14

At1g10760

1.58

starch catabolic process

SEX1_GWD_SOP__SEX1 (STARCH EXCESS 1)

15

At4g15210

1.54

starch catabolic process

BMY1_ATBETA-AMY_AT-BETA-AMY_RAM1__ATBETA-AMY (BETA-AMYLASE); beta-amylase

16

At2g40840

1.5

starch catabolic process

DPE2__DPE2 (DISPROPORTION ATING ENZYME 2); 4-alpha-glucanotransferase/heteroglycan binding

17

At1g03310

1.5

starch metabolic process

ATISA2/BE2/DBE1/ISA2 (DEBRANCHING ENZYME 1); alpha-amylase/isoamylase

Lipid metabolism

1

At4g39670

4.88

glycolipid binding; molecular function unknown

glycolipid binding/glycolipid transporter

2

At2g37870

2.25

lipid binding; lipid transport

protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

3

At2g24560

2.04

lipid metabolic process

carboxylesterase

4

At3g22120

2.01

lipid transport; lipid binding

CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN); lipid binding

5

At5g55450

1.98

lipid transport; lipid binding

protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

6

At4g10955

1.75

lipid metabolic process

lipase class 3 family protein

7

At4g12500

1.72

lipid binding

protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

8

At5g64080

1.71

lipid binding

protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

9

At2g38530

1.61

phospholipid transfer to membrane

LTP2 (LIPID TRANSFER PROTEIN 2); lipid binding

ABA Responsive

1

At1g63840

3.27

Response to ABA stimulus; endome- mbrane system

Zinc finger (C3HC4-type RING finger) family protein

2

At5g01540

3.22

response to abscisic acid stimulus

lectin protein kinase, putative

3

At3g61890

2.21

response to abscisic acid stimulus

ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 12); transcription factor

4

At1g69270

2.04

abscisic acid mediated signaling

RPK1 (RECEPTOR-LIKE PROTEIN KINASE 1); kinase

Others

1

At1g21120

3.96

O-methyltransferase activity

O-methyltransferase, putative

2

At1g78410

3.79

Response to oxidative stress; Molecular function unknown

VQ motif-containing protein

3

At2g21210

3.31

Molecular function unknown

auxin-responsive protein, putative

4

At5g06760

3.18

Molecular function unknown

late embryogenesis abundant group 1 domain-containing protein/LEA group 1 domain-containing protein

5

At1g73330

3.09

response to water deprivation

ATDR4__ATDR4 (Arabidopsis thaliana drought-repressed 4)

6

At1g24140

2.67

anchored to membrane

matrixin family protein

7

At3g11410

2.61

response to water deprivation

AHG3_ATPP2CA__AHG3/ATPP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding/protein serine/threonine phosphatase

8

At2g15390

2.05

cell wall biogenesis; Fucosyltransferase activity

FUT4 (fucosyltransferase 4); fucosyltransferase

9

At1g55920

1.97

response to cold

AtSerat2;1_SAT1_SAT5__AtSerat2;1 (SERINE ACETYLTRANSFERASE 1)

10

At3g22840

1.94

response to cold

ELIP1_ELIP__ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN); chlorophyll binding

11

At3g55130

1.84

ATPase activity, coupled to transmembrane movement of substances

ATWBC19 (WHITE-BROWN COMPLEX HOMOLOG 19); ATPase, coupled to transmembrane movement of substances

12

At4g26850

1.61

L-ascorbic acid biosynthetic process

VTC2 (VITAMIN C DEFECTIVE 2)