Table 2 Putative expression of de-novo identified families of TEs. TE families are constituted by sequences with similarity ≥80% among all its members
superfamily | total number of TE families | Number of families hitting at least one EST with a minimum coverage of 70% EST | proportion of TE families with putative expression |
|---|---|---|---|
Copia | 819 | 77 | 9.40 |
Gypsy | 263 | 20 | 7.60 |
L1 | 115 | 1 | 0.87 |
hAT | 68 | 7 | 10.29 |
Mutator | 60 | 0 | 0.00 |
En-Spm | 38 | 1 | 2.63 |
Helitron | 32 | 0 | 0.00 |
Harbinger | 15 | 0 | 0.00 |
Tc1-Mariner | 7 | 0 | 0.00 |