P. digitatum strain | PHI26 | Pd1 |
---|---|---|
Sequencing technology | Illumina (HiSeq 2000) | Roche 454 |
Genome size | 26 (Mb) | 26 (Mb) |
Sequencing coverage | 83x | 24x |
Number of contigs | 287 | 544 |
Number of scaffolds | 102 | 54 |
Number of Large Scaffolds (>100 Kb) | 36 | 26 |
N50 (base pairs) | 878,909 | 1,533,507 |
Number of indetermined sites (Ns) | 340,936 | 1,168,836 |
GC content (%) | 48.9 | 48.9 |
Number of genes | 9,153 | 8,969 |
Mean gene length (nucleotides) | 1,387 | 1,366 |
Percentage of genes with introns | 67% | 67% |
Mean number of exons per gene | 2.66 | 2.68 |