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Table 1 Summary of the main assembly and annotation features of the genomes of the two sequenced Penicillium digitatum strains

From: Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus

P. digitatum strain

PHI26

Pd1

Sequencing technology

Illumina (HiSeq 2000)

Roche 454

Genome size

26 (Mb)

26 (Mb)

Sequencing coverage

83x

24x

Number of contigs

287

544

Number of scaffolds

102

54

Number of Large Scaffolds (>100 Kb)

36

26

N50 (base pairs)

878,909

1,533,507

Number of indetermined sites (Ns)

340,936

1,168,836

GC content (%)

48.9

48.9

Number of genes

9,153

8,969

Mean gene length (nucleotides)

1,387

1,366

Percentage of genes with introns

67%

67%

Mean number of exons per gene

2.66

2.68