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Table 2 SSH clones and targeted ORFs present in highly pathogenic strains (XaFL07-1, GPE PC73 and HVO082)

From: Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels

XaFL07-1 SSH clone

GPE PC73 ORF

Protein size

Protein description/predicted Pfam domain or predicted function

Paralog (% identity in Aa)

Best Blast Hit with other xanthomonads (NCBI)

VI-G9

XALc_1622

540 Aa

Hypothetical protein/Integral membrane sensory domain found in signaling proteins

XALc_2416 (83%)

No hit found

I-C4

XALc_2283

351 Aa

Hypothetical protein/Cytochrome P450 superfamily (oxidoreductase)

 

XVA NCPPB702: XcampvN_010100019130 with S:1228, E: 1e-167, I: 244/347 (70%)

I-C4

XALc_2284

35 Aa

Hypothetical protein/Pseudogene

 

No hit found

I-D2

XALc_2627

87 Aa

Hypothetical protein/Phage

XALc_2395 (99%)

No hit found

I-D2

XALc_2628

168 Aa

Hypothetical protein/Phage

XALc_2396 (98%)

No hit found

I-F8

XALc_1545

69 Aa

Hypothetical protein/Phage

 

No hit found

I-F8

XALc_1546

72 Aa

Hypothetical protein/Phage

 

No hit found

I-G2

XALc_2561

223 Aa

Hypothetical protein/Unknown (located near ABC transporter genes)

 

XOO MAFF 311018: XOO_1679 with S:1092, E: 4e-151, I: 209/223 (94%)

III-E3

XALc_0703

311 Aa

ABC transporter

 

No hit found

V-H6

XALc_0704

400 Aa

Hypothetical protein/ABC transporter

 

No hit found

III-H5

XALc_1631

254 Aa

Hypothetical protein/Phage

 

No hit found

IV-B5

XALc_1361

847 Aa

Methyl-accepting chemotaxis protein

 

XCR 756C: XCR_213 with S:2630, E: 0, I: 533/798 (67%)

IV-B12

XALc_1803

211 Aa

Hypothetical protein/Phage

 

XCV 85-10: XCV2218 with S:383, E:9e-44, I:96/199 (48%)

VI-A11

XALc_2887

224 Aa

CRISPR-associated protein Cas5d

 

XOO MAFF 311018: XOO_0797 with S:1041, E: 2e-143, I: 195/222 (88%)

VI-H8

XALc_2384

462 Aa

Recombinase/Resolvase (Phage)

XALc_2617 (97%)

No hit found

II-H2

XALc_1232

415 Aa

ABC transporter

 

XOC BLS256: Xoryp_010100020185 with S:1998, E:0, I:388/415 (93%)

III-F5

XALc_1231

439 Aa

ABC transporter

 

XOC BLS256: Xoryp_010100020190 with S:2041:, E:0, I:397/439 (90%)

V-F1

XALc_1228

413 Aa

Hypothetical protein/Unknown

 

No hit found

V-F1

XALc_1229

272 Aa

Hypothetical protein/Unknown

 

XOC BLS256: Xoryp_20200 with S:1261, E:8e-175, I:240/273 (88%)

V-H8

XALc_1226

198 Aa

Hypothetical protein/Unknown

 

No hit found

VI-H11

Intergenic Sequence

2,117 bp

located between a tRNA (XALc_0254) and an entericidin gene (XALc_0255)

  
  1. XCV: X. campestris pv. vesicatoria; XOO: X. oryzae pv. oryzae; XCR: X. campestris pv. raphani; XOC: X. oryzae pv. oryzicola; XVA: X. campestris pv. vasculorum
  2. bp: nucleotide base pair; Aa: amino acid; S: score; E: E value; I: % of identity between query sequence and subject sequence.