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Table 2 RNA-Seq sequencing and coverage of the grapevine transcriptome for each biological replicate

From: Downy mildew resistance induced by Trichoderma harzianum T39 in susceptible grapevines partially mimics transcriptional changes of resistant genotypes

Treatmenta

Replicateb

Sequenced bases (Mbp)c

Read length (bp)d

Coverage (fold)e

C

1

1844

95

42

 

2

1812

95

42

 

3

1393

93

32

T39

1

2195

94

50

 

2

3054

94

70

 

3

2253

95

52

C+P.v.

1

1981

95

46

 

2

2244

95

52

 

3

2049

95

47

T39+P.v.

1

1999

94

46

 

2

2500

94

57

 

3

2028

95

47

  1. a Grapevine leaves of control (C), Trichoderma harzianum T39-treated (T39), Plasmopara viticola-inoculated control (C+P.v.) and P. viticola-inoculated T39-treated (T39+P.v.) plants.
  2. b Biological replicates (plants), numbered from 1 to 3.
  3. c Total bases (Mbp) sequenced by RNA-Seq analysis that passed the quality check.
  4. d Mean length (bp) of sequenced reads.
  5. e Coverage of the Pinot Noir grapevine transcriptome[77] Release 3 (43.5 Mbp)[78].