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Table 2 Putative miRNA-related SNPs associated with schizophrenia

From: MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs

mirSNP

Involved gene

MAFa

Involved miRNAs

Alleleb

SCZ-associated SNP

Linkagec

p value

OR

rs11178988

TBC1D15

0.156

hsa-miR-145-3p, hsa-miR-3680-3p, hsa-miR-5689, hsa-miR-1294

C/T

rs17110426

0.945521

4.06E-06

0.6449

rs11178989

TBC1D15

0.156

hsa-miR-4501

A/C

rs17110426

0.945521

4.06E-06

0.6449

rs17110432

TBC1D15

0.167

hsa-miR-1193, hsa-miR-335-3p, hsa-miR-29b-2-5p

A/G

rs17110426

1

4.06E-06

0.6449

rs11544338

FAM117B

0.305

hsa-miR-409-3p, hsa-miR-653

A/C/G/T

rs11544338

1

5.48E-06

0.6511

rs11680951

FAM117B

0.291

hsa-miR-516a-3p, hsa-miR-376a-5p, hsa-miR-1287, hsa-miR-145-3p, hsa-miR-5191, hsa-miR-516b-3p

A/C/G/T

rs11544338

1

5.48E-06

0.6511

rs6058896

DNMT3B

0.078

hsa-miR-30b-5p, hsa-miR-3686, hsa-miR-30c-5p, hsa-miR-4773, hsa-miR-2278, hsa-miR-589-3p

C/T

rs6058894

0.946365

2.31E-05

1.584

rs10484565

TAP2

0.078

hsa-miR-3689b-5p, hsa-miR-3177-5p, hsa-miR-3689a-5p, hsa-miR-3689f, hsa-miR-190b, hsa-miR-3689e, hsa-miR-190a

A/G

rs10484565

1

3.58E-05

1.448

rs670358

CDC42BPG

0.395

hsa-miR-4305, hsa-miR-331-3p, hsa-miR-4638-3p, hsa-miR-4705, hsa-miR-3690, hsa-miR-5195-5p, hsa-miR-4308

A/G

rs670358

1

4.68E-05

0.7677

rs11563929

STEAP2

0.1

hsa-miR-16-2-3p, hsa-miR-195-3p, hsa-miR-3942-5p, hsa-miR-4703-5p, hsa-miR-4766-3p

G/T

rs11563929

1

6.81E-05

0.7281

rs16870907

TAP2

0.047

hsa-miR-4760-3p, hsa-miR-330-3p

C/T

rs16870907

1

8.48E-05

1.589

rs12178

ZBTB34

0.456

hsa-miR-1267, hsa-miR-501-5p, hsa-miR-3613-3p, hsa-miR-653

A/C/G/T

rs12178

1

9.66E-05

1.277

  1. Eleven putative miRNA-related SNPs link to SCZ-GWAS SNPs with a significance of p < 0.0001.
  2. aMinor allele frequencies (MAF) are from an HCB population.
  3. bAllele reports are from NCBI.
  4. cLinkage analysis of putative miRNA-related SNPs and SCZ-associated SNPs in 90 Asian individuals from the HapMap project.