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Table 6 Phenylpropanoid/stilbene pathway transcripts

From: Transcriptome analysis at four developmental stages of grape berry (Vitis vinifera cv. Shiraz) provides insights into regulated and coordinated gene expression

Encoded protein description

Cluster

RefSeq accession(s)

Phenylalanine ammonia-lyase

1 (young berry)

XM_002285241.1

 

2 (early veraison)

XM_002278480.2

 

4 (ripe berry)

XM_002268220.2, XM_002267917.2, XM_003633939.1, XM_002268145.2, XM_003633937.1, XM_003633938.1, XM_002268737.2, XM_002268696.2

 

5 (low at veraison)

XM_002281763.2

 

NC

XM_002272890.1

Cinnamic acid 4-hydroxylase

4 (ripe berry)

XM_002266106.1, XM_002266001.1

 

5 (low at veraison)

XM_002266202.1

4-coumarate:CoA ligase

1 (young berry)

XM_002285884.2, XM_002285885.1, XM_002274958.2

 

5 (low at veraison)

XM_002265509.1, XM_002272746.2

 

8 (increasing)

XM_002270324.1

 

9 (decreasing)

XM_002279486.2, XM_002270556.1

 

NC

XM_002276317.2

 

ND

XM_002271550.2, XM_002269909.1, XM_002266436.2

Stilbene synthase 1-like

4 (ripe berry)

XM_002264419.2, XM_002263926.1a, XM_002263845.2, XM_003634014.1a, XM_002263686.2, XM_003634018.1, XM_003634015.1, XM_003634017.1

Stilbene synthase 2-like

4 (ripe berry)

XM_002265955.1, XM_002278447.2, XM_002278349.1, XM_002265193.2, XM_002271335.2, XM_002268806.2b, XM_003634020.1b, XM_002272093.2, XM_003634032.1

 

8 (increasing)

XM_003634009.1

Stilbene synthase 4-like

4 (ripe berry)

XM_002264953.2, XM_002278263.2, XM_002269257.2, XM_003634025.1, XM_003634026.1, XM_003634021.1, XM_003634022.1, XM_003634019.1, XM_003634028.1, XM_003634023.1, XM_003634024.1, XM_003634027.1

Stilbene synthase 5-like

4 (ripe berry)

XM_002268720.2, XM_002278318.2, XM_002263999.2, XM_002269350.2,

 

ND

XM_002263927.1

Stilbene synthase 6-like

4 (ripe berry)

XM_002262908.2, XM_002263771.2, XM_003634016.1

Chalcone synthase

1 (young berry)

XM_002276885.2, XM_002276910.1

 

2 (low at veraison)

XM_002263983.1

 

NC

XM_002276617.1

 

ND

XM_002276606.1, XM_002269415.2, XM_003634008.1

  1. Clustering of genes involved in phenylpropanoid metabolism and stilbene biosynthesis. NC, expressed but not clustered; ND, not detected; a transcripts with the highest sequence similarity to the functionally characterised resveratrol synthase, Vst1 [65]; b transcripts with the highest sequence similarity to the functionally characterised resveratrol synthase, StSy [64].