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Table 2 Differential isoform usage between Pru and RH strains

From: De novo reconstruction of the Toxoplasma gondii transcriptome improves on the current genome annotation and reveals alternatively spliced transcripts and putative long non-coding RNAs

Gene

Pru

RH

TGME49_008740

(0,0):3272,(0,1):62,(1,0):14,(1,1):275

(0,0):9355,(0,1):99,(1,0):73,(1,1):799

TGME49_112660

(0,0):580,(0,1):2,(1,0):4,(1,1):68

(0,0):667,(0,1):23,(1,1):74

TGME49_078510

(0,0):2647,(0,1):15,(1,0):15,(1,1):178

(0,0):4612,(0,1):18,(1,0):5,(1,1):225

TGME49_097470

(0,0):1648,(0,1):12,(1,0):22,(1,1):140

(0,0):3796,(0,1):19,(1,1):297

  1. (0,0):x indicates x reads align to both isoforms but are not used in support of either isoform for a variety of reasons including reads aligning to exons far removed from the spliced site, (0,1):x, x reads support the second isoform but not the first, (1,0):x indicate x reads support the first isoform and not the second (1,1):x, x reads supporting both isoforms. Missing values for RH indicate the absence of reads supporting the alternative isoform. The gene descriptions are shown in Table1.
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BMC Genomics

ISSN: 1471-2164

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