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Table 1 Statistics of small RNA sequences from different tomato fruit ripening stages

From: Sculpting the maturation, softening and ethylene pathway: The influences of microRNAs on tomato fruits

Ripening stages

Reads types

Redundant

Non-redundant

 

Raw reads

4,333,963

 
 

Low quality reads

1,562,982

 

Mature green

Adaptor reads

382,811

 
 

High quality reads(≥ 18nt)

2,388,170

1,604,689

 

Matching the genome

356, 350

141,075

 

rRNA/tRNA/snRNA/snoRNA matches

65,593

11,177

 

Raw reads

5,514,197

 
 

Low quality reads

1,728,593

 

Breaker stage

Adaptor reads

186,021

 
 

High quality reads(≥ 18nt)

3,599,583

2,309,447

 

Matching the genome

681,895

346,166

 

rRNA/tRNA/snRNA/snoRNA matches

62,734

9,518

 

Raw reads

5,334,158

 
 

Low quality reads

3,042,644

 

Red Ripe stage

Adaptor reads

17,464

 
 

High quality reads(≥ 18nt)

2,274,050

1,447,762

 

Matching the genome

437,520

220,188

 

rRNA/tRNA/snRNA/snoRNA matches

29,865

4,750