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Table 1 Number of called SNPs grouped by both genomic location class and positive relative to baits

From: Targeted enrichment of the black cottonwood (Populus trichocarpa) gene space using sequence capture

 

Category

Candidate SNPS

Called SNPs

Percent of total

Categorized by annotation of genomic region

    
 

Promoter

152223

64534

12.8

 

5′-UTR

30586

13433

2.7

 

Exon

446450

240693

47.9

 

3′-UTR

29481

11753

2.3

 

Intron

329559

149919

29.8

 

Intergenic1

154785

22329

4.4

Categorized by position relative to baits

    
 

Within-bait

360558

241351

48.7

 

Adjacent to baits

568115

225581

45.5

 

Off-target

201201

28594

5.8

  1. 1Inclues SNPs from both targeted intergenic control regions as well as off-target regions.