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Table 2 Time-dependent elicitation of cytokine and signaling pathway by TSA in H9c2 cells*

From: Pan-histone deacetylase inhibitors regulate signaling pathways involved in proliferative and pro-inflammatory mechanisms in H9c2 cells

Control versus TSA (6 h)

Control versus TSA (24 h)

Gene pathway

Total connections (No. of focus genes)

Gene pathway

Total connections (No. of focus genes)

TGFβ1

33 (16)

TGFβ1

29 (18)

HNF4A

30 (14)

HNF4A

30 (12)

MyC

30 (12)

ERK-p38-JNK

56 (10)

PTEN-PI3K-Akt

53 (11)

TP53

33 (10)

TNF-α

35 (10)

TNF-.α

30 ( 8 )

NFκΒ

33 (10)

FOS

28 ( 8 )

p38-JNK

45 ( 9 )

CDKN1A

12 ( 8 )

IFNγ

32 ( 9 )

NFκΒ

29 ( 3 )

Caspase 3

28 ( 8 )

Calcium

28 ( 3 )

CDKN2A

10 ( 8 )

AP1

18 ( 3 )

Calcium

31 ( 6 )

CaMKII

10 ( 3 )

Insulin

22 ( 6 )

Caspase 3

16 ( 2 )

TP53

20 ( 5 )

  
  1. *DEGs in response to TSA treatment of H9c2 cells for 6 and 24 h were subject to IPA as detailed in “Material and Methods”. Gene pathways with total number of connections (direct and indirect) and focus genes are hierarchically arranged according to the number of focus genes. The relative order of the p53-specific network elicited at 6 h (13th) and 24 h (4th) is mechanistically significant.