A model of binding on DNA microarrays: understanding the combined effect of probe synthesis failure, cross-hybridization, DNA fragmentation and other experimental details of affymetrix arrays

Table 4 Retention rates

Design	A retention	C retention	G retention	T retention
cwrs-07	0.963 ± 0.028	0.981 ± 0.013	0.865 ± 0.036	0.998 ± 0.007
cwrs-39	0.882 ± 0.005	0.930 ± 0.011	0.791 ± 0.017	1.000 ± 0.001
cwrs-51	0.904 ± 0.010	0.961 ± 0.015	0.791 ± 0.014	1.000 ± 0.000
cwrs-53	0.901 ± 0.008	0.972 ± 0.015	0.809 ± 0.015	1.000 ± 0.000
cwrs-63	0.944 ± 0.025	0.959 ± 0.013	0.866 ± 0.029	0.998 ± 0.003
cwrs-67	0.938 ± 0.013	0.956 ± 0.011	0.884 ± 0.021	0.998 ± 0.006
fmr1	0.959 ± 0.014	0.941 ± 0.027	0.953 ± 0.029	0.962 ± 0.010

Table4: Mean retention rate for each nucleotide. (Rate abasic site = 1 – retention rate).

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