|  |  |  |  | Tsp 45I RRL sequencing |  |  |
---|
 |  |
Concordance
| Â | Â |
Discordance
| Â | Â |
---|
 |  |  | HOM ref. | HOM mut. | HET ref. | HET mut. | Total |
---|
Illumina genotyping | HOM ref. | 55,435(99.95%) | --- | 5 | 22 | 0 | 27 |
 | HOM mut. | 19,847(99.80%) | 21 | 1 | 18 | 0 | 40 |
 | HET ref. | 21,244(92.56%) | 1458 | 245 | 3 | 2 | 1708 |
 | HETmut. | 0(0.00%) | 4 | 0 | 0 | 0 | 4 |
 | Total | 96,445(98.19%) | 1483 | 251 | 43 | 2 | 1779 |
- The alleles genotyped by Illumina platform and RRL sequencing were classified into four categories: HOM ref. (homozygotes where both alleles are identical to the reference), HOM mut. (homozygotes where both alleles differ from the reference), HET ref. (heterozygotes where only one allele is identical to the reference), and HET mut. (heterozygotes where both alleles differ from the reference and also differ from one another).