Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing

BMC Genomics

Table 1 Summary of small RNA sequencing data analysis

	Leaves	Roots	Seedlings	Flowers
Total raw reads	16869046	20464127	17188077	27937376
High-quality reads^a	11797480	16722005	16846110	20238107
Unique sequence tags	3372753	4187414	4015702	3453543
Total Rfam matching sequences	757788	5653553	5307793	9726833
Unique Rfam matching sequences	51227	60121	224240	96726
Perfect miRNA matching sequences^b	265161	307003	582159	1415225
Total unfiltered isoform sequences	798835	287027	467691	228556
Total miRNA isoform sequences	744348	200630	335274	60167

^aSequences after quality, adapter and size filters. ^bTotal sequences from conserved miRNAs.

ISSN: 1471-2164