From: Rootstock-regulated gene expression patterns associated with fire blight resistance in apple
Seq_ID | GenBank_Accn | Malus Contig BLAST Hit | Description | evalue | SSH Response§ |
---|---|---|---|---|---|
APPLE0F000017044/ | EG974017 | MDC011793.214 | plastocyanin-like domain-containing protein | 9E-14 | early up-regulated |
APPLE0FR00078469 | Â | Â | Â | Â | Â |
APPLE0F000011437/ | Â | Â | fibrillarin 1 (FBR1) (FIB1) (SKIP7) identical to fibrillarin 1 | 1E-59 | Â |
APPLE0F000051475/ | EG974020 | MDC019359.48 | GI:9965653 from [A. thaliana]; C-terminus identical to SKP1 | 3E-53 | early up-regulated |
APPLE0F000020924 | Â | Â | interacting partner 7 GI:10716959 from [A. thaliana] | 3E-28 | Â |
APPLE0F000022573 | EH009495 | MDC009164.88 | putative cytochrome c oxidase subunit 5c [Helianthus annuus] | 5E-14 | up-regulated 1 hpi |
APPLE0F000017734/ | EH009489 | MDC002049.218 | leucine-rich repeat transmembrane protein kinase, putative | 4E-11 | up-regulated 1 hpi |
APPLE0F000060312 | Â | Â | Â | 9E-06 | Â |
APPLE0F000019504 | EH009551 | MDC011946.321 | L-ascorbate peroxidase 1, cytosolic (APX1 | 7E-12 | up-regulated 1 hpi |
APPLE0FR00043470 | EH009570 | MDC010527.333 | Encodes a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport. | Â | up-regulated 1 hpi |
APPLE0F000017575/ | EH009572 | MDC015841.261 | oxygen-evolving enhancer protein 3, chloroplast, putative | 5E-13 | up-regulated 1 hpi |
APPLE0F000020381 | Â | Â | (PSBQ2 | 7E-11 | Â |
APPLE0F000015792 | EH009577 | MDC006495.372 | catalase 3 (SEN2) | 3E-12 | up-regulated 1 hpi |
APPLE0F000015821 | Â | Â | Â | 4E-16 | Â |
APPLE0F000006776 | EH009561/ | MDC013772.152 | putative strong similarity to plastidic fructose-bisphosphate) | 3E-25 | up-regulated 1 hpi |
 | EH009491 |  | aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1 |  |  |
APPLE00R00054041 | EH009563 | MDC008063.227 | similar to putative 60S acidic ribosomal protein P0 GB:P50346 | 4E-32 | up-regulated 1 hpi |
APPLE0F000022368 | EH090785 | MDC016063.220 | Glycine-rich RNA-binding protein 7 {A. thaliana} | 2E-11 | up-regulated 12 hpi |
APPLE00R00018459 | EH090787 | MDC002341.180 | 40S ribosomal protein S27 (ARS27A | 2E-17 | up-regulated 12 hpi |
APPLE0F000016047/ | EH090788 | MDC013560.291 | chlorophyll A-B binding protein 2, chloroplast/LHCII type I | 5E-27 | up-regulated 12 hpi |
APPLE0F000021251 | Â | Â | CAB-2/CAB-140 (CAB2B) | Â | Â |
APPLE00R00018530 | EH090762 | MDC009496.462 | putative mRNA binding protein precursor (GI:26453355) | 1E-22 | up-regulated 2 hpi |
APPLE0F000021275 | EH090763 | MDC011225.39 | dehydrin ERD10 (Low-temperature-induced protein LTI45) [A. thaliana] SWISS-PROT:P42759 | Â | up-regulated 2 hpi |
APPLE0F000020273 | EH090764 | MDC007862.188 | heat shock protein 81-4 (HSP81-4) contains Pfam profiles PF02518, PF00183: Hsp90 pro | 1E-22 | up-regulated 2 hpi |
APPLE0F000017683/ | EG974803 | MDC009596.270 | sugar transporter, putative similar to ERD6 protein {A. thaliana} | 8E-29 | up-regulated 48 and 72 hpi |
APPLE0F000019355 | Â | Â | Â | 1E-33 | 72 hpi |
APPLE0F000015156 | EG974779 | MDC021689.444 | contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family | 1E-11 | up-reg. 48 and 72 hpi |
APPLE0F000018467/ | Â | Â | Â | Â | Â |
APPLE0F000019900/ | Â | Â | Â | Â | Â |
APPLE0F000060942/ | EG974812 | MDC007381.261 | cytosolic (GAPC)/NAD-dependent glyceraldehyde-3-phosphate | 1E-20 | up-reg. 48 and 72 hpi |
APPLE0FR00073702/ | Â | Â | dehydrogenase | Â | Â |
APPLE0FR00045573/ | Â | Â | Â | Â | Â |
APPLE0F000015746 | EG974761 | MDC017137.174 | ribulose bisphosphate carboxylase small chain 3B/RuBisCO small subunit 3B (RBCS-3B) (ATS3B | 8E-20 | up-reg. 48 and 72 hpi |
APPLE00R00062179 | EH034496/ | MDC006746.407 | conserved hypothetical protein [Corynebacterium efficiens YS- | 4E-07 | early up-reg., down-, |
 | EG974019 |  | 314] mitochondrial 26S ribosomal RNA protein |  | reg. 2 hpi |
APPLE00R00062069/ | Â | Â | Â | Â | Â |
APPLE00R00062142/ | Â | Â | Â | Â | early up-reg., up-reg. |
APPLE0FR00063223/ | EH009493/ | MDC021568.167 | 3'utr of MDP0000053760 Unknown A. thaliana. protein | 3E-12 | 1 hpi, down-reg. 2 |
APPLE0FR00072001/ | EG974018 | Â | Â | Â | hpi, |
APPLE0FR00074986 | Â | Â | Â | Â | Â |
APPLE0F000019494/ | EH034531/ | MDC008933.302 | jasmonate-zim-domain protein 1 | Â | up-reg. 1 hpi, down- |
APPLE0FR00070531 | EH009567 | Â | Â | Â | reg. 2 hpi |
APPLE0F000015761/ | EH034470/ | Â | Â | 1E-20 | Â |
APPLE0F000016441/ | EH034448/ | MDC012615.331 | chlorophyll A-B binding protein 2, chloroplast/LHCII type I | 3E-70 | up-reg. 1 hpi, down- |
APPLE0F000017178/ | EH009539/ | Â | CAB-2/CAB-140 (CAB2B) | 1E-20 | reg. 2 hpi, |
APPLE0F000016322 | EH009499 | Â | Â | 1E-70 | Â |
 | EH034678/ |  |  |  |  |
 | EH034677/ |  |  |  |  |
 | EH034635/ |  |  |  | up-reg. 1 hpi, down- |
APPLE00R00015736/ | EH034631/ | MDC017026.232 | ribulose bisphosphate carboxylase small chain 3B/RuBisCO | 4E-26 | reg. 1 hpi, down-reg. |
APPLE0F000025537 | EH034620/ | Â | small subunit 3B (RBCS-3B) (ATS3B) | Â | 12 hpi, down-reg. 24 |
 | EH034600/ |  |  |  | hpi, down-reg. 48 |
 | EH034581/ |  |  |  | hpi, |
 | EH034578/ |  |  |  |  |
 | EH009517/ |  |  |  |  |
 | EH009492 |  |  |  |  |
APPLE00R00061494 | EH034644 | MDC008988.418 | ribosomal protein L2 family protein similar to ribosomal protein L2 [Gossypium arboreum] GI:17644114; contains Pfam profile PF03947: Ribosomal Proteins L2, C-terminal domain | 4E-07 | down-regulated 1 hpi |
APPLE00R00016015 | EH034651 | MDC013883.400 | glycosyl hydrolase family 1 protein contains Pfam PF00232: domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to amygdalin hydrolase isoform AH I precursor | 1E-22 | down-regulated 1 hpi |
APPLE0F000019334 | EH034681 | MDC023674.27 | expressed protein | 4E-25 | down-regulated 1 hpi |
APPLE0F000015900 | EH034690 | MDC013694.297 | 68414.m02538 plastocyanin similar to plastocyanin GI:1865683 from [A. thaliana] | 9E-11 | down-regulated 1 hpi |
 | EH034668/ |  |  |  |  |
APPLE0FR00069028 | EH034488/ | MDC019115.109 | piggyBac transposable element derived 5 [Homo sapiens] | 1E+00 | down-reg. 1 hpi, |
 | EH034454 |  |  |  | down-reg. 2 hpi |
APPLE0F000059582 | EH034691/ | MDC011711.503 | elongation factor 1-alpha/EF-1-alpha | 1E-81 | down-reg. 1 hpi, |
 | EH034556 |  |  |  | down-reg. 24 hpi |
APPLE0F000021983 | EH034459/ | MDC004849.508 | sodium/calcium exchanger family protein/calcium-binding EF | 2E-18 | down-regulated 2 hpi |
 | EH034663 |  | hand family protein contains Pfam profiles: PF01699 |  |  |
APPLE0F000017271 | EH034459/ | MDC004849.509 | oxygen-evolving enhancer protein, chloroplast, putative/33 kDa | 3E-48 | down-regulated 2 hpi |
 | EH034663 |  | subunit of oxygen evolving system of photosystem II, |  |  |
APPLE0F000022030 | EH034485 | MDC015890.82 | ADP-ribosylation factor, putative similar to DcARF1 | 3E-26 | down-regulated 2 hpi |
APPLE0F000018523 | EH034540 | MDC015915.252 | heat shock protein 70, putative/HSP70, putative strong similarity to heat shock protein GI:425194 [Spinacia oleracea] | 8E-49 | down-regulated 2 hpi |
APPLE0F000020112 | EH034525 | MDC000302.731 | ribulose bisphosphate carboxylase small chain 3B/RuBisCO small subunit 3B (RBCS-3B) (ATS3B) | 7E-06 | down-regulated 2 hpi |
APPLE0F000050108/ | Â | Â | Â | Â | Â |
APPLE0F000061371/ | EH034439 | MDC021556.182 | polyubiquitin (UBQ4) identical to GI:17677 | 1E-112 | down-regulated 2 hpi |
APPLE0F000022561 | Â | Â | Â | Â | Â |
APPLE0F000060823 | EH034517 | MDC012000.76 | heat shock cognate 70 kDa protein 1 (HSC70-1) (HSP70-1) | Â | down-regulated 2 hpi |
APPLE0F000017293 | EH034563/ | MDC021812.77 | peroxidase 42 (PER42) (P42) (PRXR1 | 2E-57 | down-reg. 2 hpi, |
 | EH034487 |  |  |  | down-reg. 24 hpi |
APPLE0F000017691 | EH034538 | MDC021024.27 | phosphatidylinositol-4-phosphate 5-kinase family protein | 4E-51 | down-reg. 24 hpi |
APPLE0FR00045757 | EH034536 | MDC016554.129 | possible 5' utr for Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | Â | down-reg. 24 hpi |
APPLE00R00002434/ | EH034628 | MDC008650.425 | germin-like protein (GER3) | 1E-62 | down-reg. 48 hpi |
APPLE0F000049504 | Â | Â | Â | 9E-08 | Â |
APPLE0F000018527 | EH034604 | MDC005688.181 | oxygen-evolving enhancer protein, chloroplast, putative/33 kDa subunit of oxygen evolving system of photosystem II | Â | down-reg. 48 hpi |
APPLE00R00058028 | EH034627 | MDC010241.225 | putative/L-iditol 2-dehydrogenase, putative similar to NAD-dependent sorbitol dehydrogenase from Malus x domestica | 9E-26 | down-reg. 48 hpi |
APPLE0FR00038628 | EH009528 | MDC000300.335 | No Hits Found | Â | up-regulated 1 hpi |
APPLE0F000015847/ | EH034662 | MDC022487.75 | chlorophyll A-B binding protein/LHCII type I (LHB1B1) | 5E-31 | Â |
APPLE0F000016638 | Â | Â | Â | 4E-40 | Â |
APPLE0FR00073381 | EH034693 | MDC000997.260 | No Hits Found | Â | Â |
APPLE0F000024130 | EH034466 | MDC004582.94 | protochlorophyllide reductase A, chloroplast/PCR A/NADPH-protochlorophyllide oxidoreductase A | 5E-9 | Â |
APPLE0F000059277 | EG974791 | MDC004462.498 | 60S ribosomal protein L19 (RPL19C) similar to L19 from several species | 4E-41 | Â |
APPLE0FR00073380 | EH034693 | MDC000997.260 | No Hits Found | Â | Â |
APPLE0FR00039729 | EH009538 | MDC005169.268 | No Hits Found | Â | Â |
APPLE0FR00036633 | EH009530 | MDC001354.357 | hypothetical protein [Burkholderia fungorum] | .02 | Â |
Up in sensitive | Â | Â | Â | Â | Â |
APPLE0F000061746 | EG974808/ | MDC022200.129 | catechol oxidase activity molecular function Catalysis of the reaction: 2 catechol + O2 metal ion binding molecular function | Â | up-reg. 48 and 72 hpi |
 | EG974767 |  | Interacting selectively with any metal ion. predicted with glimmer |  |  |
APPLE0F000001556 | EH034619 | MDC011650.665 | expressed protein protein induced upon wounding-A. thaliana | 4E-79 | down-regulated 48 hpi |