Table 1 Parameters of the linkage map for the YI pedigree in C. japonica
Mapping parameters | YI pedigree |
|---|---|
Total number of available markers | 1364 |
Number of distorted markers (P < 0.01) | 74 |
Total number of markers without segregation distortion | 1290 |
Number of unlinked markers | 11 |
Total number of assigned markers | 1279 |
Number of positioned markers | 1262 |
   Number of gSNP markers | 761 |
   Number of hrmSNP markers | 159 |
   Number of CAPS markers | 121 |
   Number of RFLP markers | 117 |
   Number of SSR markers | 34 |
   Number of ssSNP markers | 33 |
   Number of meaSNP markers | 15 |
   Number of EST-SSR markers | 16 |
   Number of SNP markers | 5 |
   Number of ALP markers | 1 |
Average map density, cM | 1.1 |
Total observed map length G o , cM | 1405.2 |
Expected map length G e , cM | 1430.6 |
Observed map coverage C o (%) | 98.2 |
Expected map coverage C e (%) | 100.0 |