Skip to main content

Table 1 Summary of common carp contig annotation

From: Transcriptome analysis reveals the time of the fourth round of genome duplication in common carp (Cyprinus carpio)

Methods

 

Database

Number

Homolog search

Protein-coding

Fish protein database*

24,167

  

UniProt database

409

  

NCBI nr protein database

208

  

UTRdb

3,658

  

NCBI nr nucleotide database

14,524

ab initio search

Protein-coding

CPC

47

Unknown

  

6,656

  1. * Fish protein database consists of protein sequences from Zebrafish, Fugu, Stickleback, Tetraodon and Medaka.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us