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Table 2 Number of sequences and paralogs within common carp and zebrafish

From: Transcriptome analysis reveals the time of the fourth round of genome duplication in common carp (Cyprinus carpio)

Species

Sequences in final dataseta

Paralogous pairs

Paralogous sequencesb

Percentage of paralogsc

Gene familiesd

Duplication Event with median Ks< 2e

common carp

49,669

129,984

19,159

38.6%

4,689

8,190

zebrafish

25,348

46,385

3,774

14.9%

869

2,721

  1. a Number of the longest sequences.
  2. b Number of paralogous sequences found in the final dataset using BLASTN search.
  3. c Percentage of paralogous sequences found in the final dataset.
  4. d Number of gene families constructed with paralogous sequences using single linkage clustering.
  5. e Number of duplication events used in the distributions in Figure 2 and of which median Ks rates are < 2.