Table 1 PWM pairs with high and low FR values in the genomic set of promoters.
From: A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription
Transcription factor A (PWM ID) | Transcription factor B (PWM ID) | FR genomic (B|A) (high/low) * | Species | GC content difference |
|---|---|---|---|---|
TBP (M00471) | Six6 (PB0163) | 2.75 (high) | human | 0.28 |
Six6 (PB0163) | TBP (M00471) | 2.56 (high) | human | 0.28 |
POU1F1, POU3F2 (M00463) | Six6 (PB0163) | 2.10 (high) | mouse | 0.22 |
TBP (M00471) | POU2F1, Sox15 (M00162) | 2.09 (high) | mouse | 0.21 |
POU2F1, Sox15 (M00162) | TBP (M00471) | 2.08 (high) | mouse | 0.21 |
TBP (M00471) | Cux1 (PH0017) | 2.07 (high) | mouse | 0.22 |
Six6 (PB0163) | POU1F1, POU3F2 (M00463) | 2.06 (high) | mouse | 0.22 |
Six6 (PB0163) | TBP (M00471) | 1.89 (high) | mouse | 0.28 |
various homeobox TFs (PH0077) | TBP (M00471) | 1.88 (high) | mouse | 0.27 |
Sox17, Sox8 (PB0178) | TBP (M00471) | 1.80 (high) | mouse | 0.28 |
Zfp105 (PB0197) | TBP (M00471) | 1.80 (high) | mouse | 0.29 |
TBP (M00471) | Six6 (PB0163) | 1.79 (high) | mouse | 0.28 |
TBP (M00471) | Sox17, Sox8 (PB0178) | 1.79 (high) | mouse | 0.28 |
TBP (M00471) | various homeobox TFs (PH0077) | 1.76 (high) | mouse | 0.27 |
TBP (M00471) | Zfp105 (PB0197) | 1.75 (high) | mouse | 0.29 |
C/EBP factors (M00201) | TBP (M00471) | 1.53 (high) | mouse | 0.34 |
MITF-TFE family (bHLH) (M01029) | E2F TFs (M00516) | 0.65 (low) | mouse | 0.12 |
E2F TFs (PB0009) | MITF-TFE family (bHLH) (M01029) | 0.54 (low) | mouse | 0.15 |