From: A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription
Cluster index | Promoter set | PWM A | PWM B | TF(s) associated with PWM A | TF(s) associated with PWM B |
---|---|---|---|---|---|
1 | nonCpG | M00054 | M00054 | NF-kappaB | NF-kappaB |
1 | all | M00054 | M00054 | NF-kappaB | NF-kappaB |
9 | all | M00054 | M00054 | NF-kappaB | NF-kappaB |
12 | all | M00063 | M01171 | IRF family | Bcl6 |
12 | all | M00063 | M00963 | IRF family | T3R |
12 | nonCpG | M00063 | M00963 | IRF family | T3R |
12 | nonCpG | M00063 | M01171 | IRF family | Bcl6 |
13 | all | M00063 | M00063 | IRF family | IRF |
13 | all | M00063 | PB0060 | IRF family | Hand1::Tcfe2a, Hand1:E47, SMAD, Smad3 |
13 | all | M00063 | M00701 | IRF family | Smad3 |
14 | all | M00054 | M00249 | NF-kappaB | CHOP:C/EBPalpha |
14 | all | M00054 | M00257 | NF-kappaB | RREB-1 |
14 | all | M00054 | M00769 | NF-kappaB | AML, Osf2, PEBP, Runx1 |
18 | all | M00063 | MA0099 | IRF family | Fos |