Table 1 Number of remaining input sequences from each step of miRNA identification on the four datasets
From: C-mii: a tool for plant miRNA and target identification
| Â | TAIR10 (cDNAs) | TAIR10 (miRNAs) | miRBase 16 (Arabidopsis only) | Rfam 10 (all plant RNAs except miRNAs) |
|---|---|---|---|---|
miRNA identification steps | 33,602 | 176 | 213 | 16,219 |
1. Sequence loading | 30,707 | 176 | 213 | 15,822 |
2. Homolog search | 1286 | 175 | 213 | 31 |
3. Primary miRNA folding | 567 | 173 | 209 | 0 |
4. Precursor miRNA folding | 223 | 164 | 195 | 0 |