Table 4 Evaluation of assemblies of the simulated dataset (200 × 150 bp, 1% error) and dataset D2 and D3 with CloudBrush, Contrail, and Velvet
Dataset | Assembler | # of contigs1 | N50 | Largest contig size | Prec -ision | Recall | # of valid contigs1 | # of invalid contigs1 | Runtime (sec) |
|---|---|---|---|---|---|---|---|---|---|
200 × 150 bp 1% error | CloudBrush | 229 | 112531 | 327245 | 99.20% | 96.00% | 152 | 77 | 10616 |
| Â | Contrail | 2540 | 7554 | 36335 | 90.12% | 95.92% | 957 | 1583 | 15823 |
| Â | Velvet | 209 | 78642 | 327101 | 99.63% | 98.10% | 168 | 41 | 1317 |
D2 dataset | CloudBrush | 361 | 52961 | 156592 | 98.10% | 98.15% | 230 | 131 | 8622 |
| Â | Contrail | 300 | 43609 | 124089 | 98.47% | 96.98% | 250 | 50 | 7200 |
| Â | Velvet | 189 | 71764 | 174184 | 93.60% | 92.20% | 164 | 25 | 927 |
D3 dataset | CloudBrush | 37064 | 8880 | 114585 | 93.65% | 92.41% | 24603 | 10387 | 48603 |
| Â | Contrail | 31870 | 8274 | 105244 | 96.99% | 90.89% | 25236 | 6116 | 44619 |
| Â | Velvet | 23565 | 10847 | 106863 | 95.55% | 89.01% | 20187 | 2838 | 13963 |