Table 6 Evaluation of R. sphaeroides (genome size 4,603,060 bp)
Assembler | Num | N50 (kb) | N50 corr. (kb) | Indel > 5 bp | Misjoins | Precision | Recall | # of valid contig (> 200 bp) | # of invalid contig (> 200 bp) |
|---|---|---|---|---|---|---|---|---|---|
ABySS | 1915 | 5.9 | 4.2 | 34 | 21 | 79.78% | 86.13% | 1744 | 171 |
ALLPATHS-LG | 204 | 42.5 | 34.4 | 37 | 6 | 81.49% | 81.22% | 183 | 21 |
Bambus2 | 177 | 93.2 | 12.8 | 363 | 5 | 48.65% | 46.21% | 129 | 48 |
CABOG | 322 | 20.2 | 17.9 | 24 | 10 | 92.55% | 85.21% | 310 | 12 |
MSR-CA | 395 | 22.1 | 19.1 | 32 | 10 | 93.35% | 90.55% | 363 | 32 |
SGA | 3066 | 4.5 | 2.9 | 4 | 4 | 97.23% | 94.56% | 2758 | 308 |
SOAPdenovo | 204 | 131.7 | 14.3 | 406 | 8 | 70.86% | 70.75% | 134 | 70 |
Velvet | 583 | 15.7 | 14.5 | 27 | 8 | 94.41% | 92.37% | 545 | 38 |
CloudBrush | 661 | 12.8 | 12.7 | 10 | 2 | 96.21% | 95.85% | 567 | 94 |