Table 5 Coverage for the intersection (*) of two methods.
From: Combining multiple ChIP-seq peak detection systems using combinatorial fusion
x * y | Coverage | Number of regions | |
|---|---|---|---|
| Â | Score combination | Rank combination | Â |
B * F = QuEST * SISSRs | 10016 | 10016 | 10789 |
C * F = CisGenome * SISSRs | 11211 | 11211 | 12841 |
A * B = PeakSeq * QuEST | 11920 | 11920 | 11865 |
A * C = PeakSeq * CisGenome | 12010 | 12010 | 12662 |
E * F = MACS * SISSRs | 12351 | 12351 | 11003 |
B * C = QuEST * CisGenome | 12459 | 12459 | 14452 |
D * F = TRLocator * SISSRs | 12662 | 12662 | 10463 |
A * F = PeakSeq * SISSRs | 12921 | 12921 | 13293 |
A * E = PeakSeq * MACS | 13717 | 13717 | 12095 |
A * D = PeakSeq * TRLocator | 13939 | 13939 | 11573 |
B * E = QuEST * MACS | 14700 | 14700 | 14528 |
B * D = QuEST * TRLocator | 14725 | 14725 | 13270 |
C * E = CisGenome * MACS | 14947 | 14947 | 14244 |
C * D = CisGenome * TRLocator | 15075 | 15075 | 13155 |
D * E = TRLocator * MACS | 17725 | 17725 | 16921 |