Table 6 Coverage for the union (+) of two methods.
From: Combining multiple ChIP-seq peak detection systems using combinatorial fusion
x + y | Coverage | Number of regions | |
|---|---|---|---|
| Â | Score combination | Rank combination | Â |
A + E = PeakSeq + MACS | 18964 | 18964 | 19895 |
A + D = PeakSeq + TRLocator | 19433 | 19433 | 19281 |
C + E = CisGenome + MACS | 19458 | 19458 | 20768 |
E + F = MACS + SISSRs | 19459 | 19459 | 20767 |
A + B = PeakSeq + QuEST | 19520 | 19520 | 22191 |
D + F = TRLocator + SISSRs | 19742 | 19742 | 19673 |
B + E = QuEST + MACS | 19760 | 19760 | 21242 |
C + D = CisGenome + TRLocator | 19767 | 19767 | 19720 |
B + D = QuEST + TRLocator | 20014 | 20014 | 20117 |
D + E = TRLocator + MACS | 20127 | 20127 | 20279 |
B + F = QuEST + SISSRs | 21003 | 21003 | 25574 |
A + F = PeakSeq + SISSRs | 21032 | 21032 | 22876 |
B + C = QuEST + CisGenome | 21165 | 21165 | 26457 |
C + F = CisGenome + SISSRs | 21360 | 21360 | 26371 |
A + C = PeakSeq + CisGenome | 21738 | 21738 | 24415 |