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Table 1 Pairwise sequence identity scores of V1-V3 16S rDNA reference sequences of species in the mock sample.

From: Species-level classification of the vaginal microbiome

 

S. epidermidis

F. nucleatum

L. crispatus

P. bivia

G. vaginalis

E. faecalis

S. epidermidis

100.0%

     

F. nucleatum

71.3%

100.0%

    

L. crispatus

79.9%

71.3%

100.0%

   

P. bivia

66.9%

66.6%

64.3%

100.0%

  

G. vaginalis

71.5%

68.1%

70.7%

69.0%

100.0%

 

E. faecalis

83.3%

71.3%

79.7%

65.9%

71.3%

100%

  1. The USEARCH algorithm was used to calculate global sequence identities of the V1-V3 region of 16S rDNA reference sequences for the species in the KJMOCK sample. Accession numbers for the reference sequences are: EU373384.1, AF543300.1, FN692037.1, AB547673.1, CP002104.1, and CP002621.1.