Figure 4
From: Accurate indel prediction using paired-end short reads
Population structure of 80 accessions of the first phase of the 1001 genomes project. (A) First two principle components (PC1 and PC2) of the covariance matrix of all positive predicted indels by our indel detection tool for 80 strains of Arabidopsis thaliana. (B) First two PCs of all detected indels by the tool Pindel (v0.1) and (C) by Pindel (v0.24).